Hi Roland,
One possibility is to select the columns and built a tree based on these
columns (Calculate=>Calculate Tree or PCA).
Then in the tree windows, you can sort alignment by tree order (View=>Sort
Alignment by Tree).
Best regards,
Romain
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‐‐‐‐‐‐‐ Original Message ‐‐‐‐‐‐‐
On Saturday, July 4, 2020 11:34 AM, Roland Dunbrack <[email protected]>
wrote:
> Hello,
>
> Is there a way to sort all the sequences or a set of them in a Jalview
> session by some selected columns? For instance, I have a gapped column in
> 1000 sequences and it's a pain to try to find the inserted residue. If I can
> just sort by that column it would move to the top or the bottom of the
> sequences. In other cases, I am looking for different mutations at some
> positions in antibodies, and if I can select 3 columns from a set of
> sequences and then reorder those whole sequences in alphabetical order of the
> selected 3-residue segment in each.
>
> Thanks,
> Roland
>
> ---------------------------------------------
> Roland Dunbrack (he/his/him/him)
> Institute for Cancer Research
> Fox Chase Cancer Center
> Philadelphia PA 19111
> http://dunbrack.fccc.edu
> http://dunbrack.org
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