Bugs item #1055462, was opened at 2004-10-27 13:25 Message generated for change (Comment added) made by migueljmol You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1055462&group_id=23629
Category: File Input/Output Group: None >Status: Closed >Resolution: Invalid Priority: 5 Submitted By: Bob Hanson (hansonr) Assigned to: Miguel (migueljmol) Summary: 10pre16 fails to load multimodel movie.pdb Initial Comment: 10pre16 is refusing to load movie.pdb at http://www.stolaf.edu/people/hansonr/jmol/docs/examples/animation.htm error: Java(TM) Plug-in: Version 1.4.1_02 Using JRE version 1.4.1_02 Java HotSpot(TM) Client VM jmol will try to run: -----set echo top left;font echo 14;echo " load movie.pdb;cartoons on;trace on;wireframe off;cpk off";load movie.pdb;cartoons on;trace on;wireframe off;cpk off;set echo bottom left;font echo 16;echo " " ----- setting:echo notifyFrameChanged(0) animationReplayMode=0 FileManager.openFile(movie.pdb) SmarterModelAdapter:The model resolver thinks:Pdb java.lang.StringIndexOutOfBoundsException: String index out of range: 16 at java.lang.String.charAt(Unknown Source) at org.jmol.adapter.smarter.PdbReader.atom(PdbReader.java:135) at org.jmol.adapter.smarter.PdbReader.readModel(PdbReader.java:60) at org.jmol.adapter.smarter.ModelResolver.resolveModel(ModelResolver.java:57) at org.jmol.adapter.smarter.SmarterModelAdapter.openBufferedReader(SmarterModelAdapter.java:55) at org.openscience.jmol.viewer.managers.FileManager$FileOpenThread.openReader(FileManager.java:409) at org.openscience.jmol.viewer.managers.FileManager$FileOpenThread.openInputStream(FileManager.java:402) at org.openscience.jmol.viewer.managers.FileManager$FileOpenThread.run(FileManager.java:379) at org.openscience.jmol.viewer.managers.FileManager.openFile(FileManager.java:100) at org.openscience.jmol.viewer.JmolViewer.openFile(JmolViewer.java:945) at org.openscience.jmol.viewer.script.Eval.load(Eval.java:1606) at org.openscience.jmol.viewer.script.Eval.instructionDispatchLoop(Eval.java:348) at org.openscience.jmol.viewer.script.Eval.run(Eval.java:290) at java.lang.Thread.run(Unknown Source) error opening http://www.stolaf.edu/people/hansonr/jmol/docs/examples/movie.pdb java.lang.StringIndexOutOfBoundsException: String index out of range: 16 openFile(movie.pdb) 1122 ms ------------------------------- Note that 10pre13 works just fine. Bob ---------------------------------------------------------------------- >Comment By: Miguel (migueljmol) Date: 2004-12-13 10:59 Message: Logged In: YES user_id=1050060 Running gunzip on movie.pdb generates an error: I renamed movie.pdb to movie.pdb.gz in order to unzip it. [EMAIL PROTECTED] rhanson]$ gunzip movie.pdb.gz gunzip: movie.pdb.gz: invalid compressed data--crc error gunzip: movie.pdb.gz: invalid compressed data--length error [EMAIL PROTECTED] rhanson]$ ---------------------------------------------------------------------- Comment By: Miguel (migueljmol) Date: 2004-11-03 10:26 Message: Logged In: YES user_id=1050060 This file loads fine with the current code in the Jmol application. Q: Can you update the applet to the current Jmol-HEAD and see if it still has this problem? Miguel ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1055462&group_id=23629 ------------------------------------------------------- SF email is sponsored by - The IT Product Guide Read honest & candid reviews on hundreds of IT Products from real users. Discover which products truly live up to the hype. Start reading now. http://productguide.itmanagersjournal.com/ _______________________________________________ Jmol-developers mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-developers
