what format is p2003.xyz? Not XYZ? It has numbers down the left and bonds on the right?
2564 p2003_ab1-42_4mer_opls-dummy 1 N 59.758348 96.822567 129.784012 2 509 511 512 2 H1 58.801394 96.799278 130.106173 1 3 CG2 65.115614 93.481274 125.277843 4 5 6 7
My version of jmolApplet doesn't read this at all, and Chime chokes as well.
Bob Hanson
SourceForge.net wrote:
Bugs item #1192487, was opened at 2005-04-29 17:32
Message generated for change (Tracker Item Submitted) made by Item Submitter
You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1192487&group_id=23629
Category: None Group: None Status: Open Resolution: None Priority: 5 Submitted By: Nicolas (nicove) Assigned to: Nobody/Anonymous (nobody) Summary: NullPointerException in Monomer.scanForOffsets
Initial Comment: I already posted the problem in the Jmol developers list. I don't know what to do for this problem.
The file causing problem is in Jmol-web: fah/projects/p2003.xyz.gz
FileManager.openFile(../fah/projects/p2003.xyz.gz)
SmarterJmolAdapter:The Resolver thinks:FoldingXyz
openFile(../fah/projects/p2003.xyz.gz) 2804 ms
Exception in thread "Thread-14" java.lang.NullPointerException
at org.jmol.viewer.Monomer.scanForOffsets
(Monomer.java:81)
at org.jmol.viewer.AminoMonomer.validateAndAllocate
(AminoMonomer.java:46)
at org.jmol.viewer.Frame.distinguishAndPropogateGroup
(Frame.java:434)
at org.jmol.viewer.Frame.finalizeGroupBuild
(Frame.java:374)
at org.jmol.viewer.Frame.<init>
(Frame.java:192)
at org.jmol.viewer.ModelManager.setClientFile
(ModelManager.java:73)
at org.jmol.viewer.Viewer.openClientFile
(Viewer.java:1026)
at org.jmol.viewer.Viewer.getOpenFileError1
(Viewer.java:999)
at org.jmol.viewer.Viewer.getOpenFileError
(Viewer.java:984)
at org.jmol.viewer.Eval.load(Eval.java:1651)
at org.jmol.viewer.Eval.instructionDispatchLoop
(Eval.java:351)
at org.jmol.viewer.Eval.run(Eval.java:291)
at java.lang.Thread.run(Unknown Source)
----------------------------------------------------------------------
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--
Robert M. Hanson, [EMAIL PROTECTED], 507-646-3107 Professor of Chemistry, St. Olaf College 1520 St. Olaf Ave., Northfield, MN 55057 mailto:[EMAIL PROTECTED] http://www.stolaf.edu/people/hansonr
"Imagination is more important than knowledge." - Albert Einstein
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