Kent,

Since you've selected your bonds in the connect command just follow  
that line with

color bond blue

You can insert your favorite color:)

Are you doing this in relation to the Condor project or something else?

What are you using Jmol to look at.

Jonathan


On Mar 18, 2010, at 11:05 AM, R. Kent Wenger wrote:

> I'm trying to use the "connect" command to connect various atoms  
> that are
> not chemically bonded (to show distance restraints).  My question  
> is, how
> do I add a color option to the connect command?  I've looked at the
> documentation, and tried everything I could think of, but I haven't  
> gotten
> it to work -- one example would be *extremely* helpful.
>
> If I do
>
>   connect (atomno=442) (atomno=410);
>
> it works, but the color is not what I want.
>
> I've tried stuff like this:
>
>   connect (atomno=442) (atomno=410) (color="white");
>
> and all kinds of varations with and without parenthesis, quotes, <>,  
> etc.,
> and nothing has worked...
>
> Kent
> --
> R. Kent Wenger ([email protected], 608-262-6627,
> http://www.cs.wisc.edu/~wenger/)
> Computer Sciences Department
> University of Wisconsin-Madison
>
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                          Dr. Jonathan H. Gutow
Chemistry Department                                 [email protected]
UW-Oshkosh                                           Office:920-424-1326
800 Algoma Boulevard                                 FAX:920-424-2042
Oshkosh, WI 54901
                  http://www.uwosh.edu/facstaff/gutow






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Try the new software tools for yourself. Speed compiling, find bugs
proactively, and fine-tune applications for parallel performance.
See why Intel Parallel Studio got high marks during beta.
http://p.sf.net/sfu/intel-sw-dev
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