R. Kent Wenger wrote: > connect (atomno=442) (atomno=410); connect (atomno=586) (atomno=266); > color bond green; > > I end up with all of the bonds colored green, not just the ones I added. > If I make the whole thing one command, I get an error.
That's right. You need a select command to apply colors, connect won't do that. connect (atomno=442) (atomno=410); connect (atomno=586) (atomno=266); select atomno=442, atomno=410, atomno=586, atomno=266; color bond green; # or: select atomno=442, atomno=410; connect (selected); color bond green; select atomno=586, atomno=266; connect (selected); color bond green; > The documentation makes it look to me like you should be able to have a > color option as part of the connect command, but I haven't been able to > come up with any syntax that makes that work. No, I don't think there's such a choice. Connect bonds are normal bonds, once defined, and they take the connected atoms' colors. Only the bond type is an option. I still recommend that you use the draw method. · Dr. Angel Herraez Dep. Bioquimica y Biologia Molecular, Universidad de Alcala E-28871 Alcala de Henares (Madrid), Spain ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
