Jonathan Gutow wrote: >Although not very familiar with pymol I think the following >translations might work: > >two_sided_lighting --> fullylit >cartoon_fancy_sheets ---> turn on antialias for cartoons
Angel Herráez wrote: >Also, and more important, > set hermiteLevel 4 >and maybe > set ribbonAspectRatio 12 >or some other value > >(I'm guessing since I don't know the exact rendering Pymol uses, but >Jmol cartoons look much better with this) Thanks for all of your suggestions -- I'm also working with Jaime as part of the "pymol2jmol" development team. Jonathan -- I'll see how FULLYLIT affects surface representations. The "cartoon_fancy_sheets" simply controls if and when arrowheads are shown for beta-sheets; jmol has "rocketBarrels", but that only seems to affect alpha-helices -- Bob clarified this on a recent jmol-users posts initiated by Jaime. And yes, I have enabled anti-aliasing, wherever possible, in the Jmol scripts; though there doesn't appear to be a specific cartoon anti-alias option in the documentation. Angel -- I've already applied these setting to the translations (you can inspect the Jmol scripts on-line from the <http://biocourse.weizmann.ac.il/statusP2J>http://biocourse.weizmann.ac.il/statusP2J page), and they are indeed necessary for cartoons to be rendered correctly. Roni Gordon ------------------------------------------------------------------------------ ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
