Hi,
I have started working again on the extension to include Jmol in Wikipedia.
The current extension is not as simple as some Wikipedia people would
like (see this bugzilla
report<https://bugzilla.wikimedia.org/show_bug.cgi?id=16491>
).
One idea there is that a Media handler for molecular files should
be developed (so that an image could be displayed automatically when going
on the page of a CML file). It's interesting but seems complicated.
I have an other idea that could be not really hard to develop but would
enable to show a lot of molecules easily.
But I need more infos on what Jmol is currently capable (I have lost track
and since I am no chimist at all that's difficult to follow).
The idea is to use a simple tag with only an identifier inside to choose the
molecule.
What do you think of the ideas below ?
Can Jmol show a molecule having just a SMILES string ?
If so, what are the commands that need to be executed ?
I think we could add a syntax for Wikipedia where a user would simply have
to add something like <smiles>XXXX</smiles> to display the molecule in Jmol.
Also, can Jmol retrieve a molecular file using only an identifier (like
getting the molecule on the pdb database) ?
What are the options and the commands ?
That would allow the same kind of addition : <pdb>XXXX</pdb> to display a
molecule from the pdb database.
Nico
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