Hi guys
I have never had Jmol running on any of my wikis but I would like to change
that. But all I get is this error 4 times.
Warning: Parameter 1 to Jmol::jmolTag() expected to be a reference, value given
in /usr/local/mediawiki/includes/parser/Parser.php on line 3333
Here is what I have:
MediaWiki 1.16.0
PHP 5.3.2-1ubuntu4.5 (apache2handler)
MySQL 5.1.41-3ubuntu12.7
+ Extensions
Confirm user accounts Gibt Bürokraten die Möglichkeit, Benutzerkontenanträge
zu bestätigen Aaron Schulz
Flagged Revisions Markierte Versionen Aaron Schulz und Joerg Baach
Jmol (Version 3.3_dev) (r14489) Adds the possibility to include Jmol
applets in MediaWiki. Nicolas Vervelle, Angel Herraez und Jmol Development
Team
FCKeditor (Version fckeditor/mw-extension $Rev$ 2008) FCKeditor extension for
editing wiki pages (WYSIWYG editor) FCKeditor.net und Wikia
Google Analytics Integration (Version 2.0.2) Ermöglicht das Einbinden des
Google-Analytics-Skript (ga.js) auf Seiten Tim Laqua
####
my extensions directory looks like this
ls -l /usr/local/mediawiki/extensions/Jmol
total 4448
-rw-r--r-- 1 root root 11165 2010-10-15 16:27 JmolApplet0_Console.jar
-rw-r--r-- 1 root root 10255 2010-10-15 16:27 JmolApplet0_i18n_ar.jar
-rw-r--r-- 1 root root 21182 2010-10-15 16:27 JmolApplet0_i18n_ca.jar
-rw-r--r-- 1 root root 25041 2010-10-15 16:27 JmolApplet0_i18n_cs.jar
-rw-r--r-- 1 root root 24031 2010-10-15 16:27 JmolApplet0_i18n_da.jar
-rw-r--r-- 1 root root 23934 2010-10-15 16:27 JmolApplet0_i18n_de.jar
-rw-r--r-- 1 root root 3940 2010-10-15 16:27 JmolApplet0_i18n_el.jar
-rw-r--r-- 1 root root 16015 2010-10-15 16:27 JmolApplet0_i18n_en_GB.jar
-rw-r--r-- 1 root root 24788 2010-10-15 16:27 JmolApplet0_i18n_es.jar
-rw-r--r-- 1 root root 6967 2010-10-15 16:27 JmolApplet0_i18n_et.jar
-rw-r--r-- 1 root root 24237 2010-10-15 16:27 JmolApplet0_i18n_fr.jar
-rw-r--r-- 1 root root 20467 2010-10-15 16:27 JmolApplet0_i18n_hu.jar
-rw-r--r-- 1 root root 24187 2010-10-15 16:27 JmolApplet0_i18n_id.jar
-rw-r--r-- 1 root root 24396 2010-10-15 16:27 JmolApplet0_i18n_it.jar
-rw-r--r-- 1 root root 20014 2010-10-15 16:27 JmolApplet0_i18n_ko.jar
-rw-r--r-- 1 root root 9718 2010-10-15 16:27 JmolApplet0_i18n_nb.jar
-rw-r--r-- 1 root root 23101 2010-10-15 16:27 JmolApplet0_i18n_nl.jar
-rw-r--r-- 1 root root 9447 2010-10-15 16:27 JmolApplet0_i18n_oc.jar
-rw-r--r-- 1 root root 13665 2010-10-15 16:27 JmolApplet0_i18n_pl.jar
-rw-r--r-- 1 root root 23141 2010-10-15 16:27 JmolApplet0_i18n_pt_BR.jar
-rw-r--r-- 1 root root 14187 2010-10-15 16:27 JmolApplet0_i18n_pt.jar
-rw-r--r-- 1 root root 10264 2010-10-15 16:27 JmolApplet0_i18n_ru.jar
-rw-r--r-- 1 root root 3498 2010-10-15 16:27 JmolApplet0_i18n_sl.jar
-rw-r--r-- 1 root root 10982 2010-10-15 16:27 JmolApplet0_i18n_sv.jar
-rw-r--r-- 1 root root 7689 2010-10-15 16:27 JmolApplet0_i18n_ta.jar
-rw-r--r-- 1 root root 21579 2010-10-15 16:27 JmolApplet0_i18n_tr.jar
-rw-r--r-- 1 root root 27030 2010-10-15 16:27 JmolApplet0_i18n_uk.jar
-rw-r--r-- 1 root root 23539 2010-10-15 16:27 JmolApplet0_i18n_zh_CN.jar
-rw-r--r-- 1 root root 25344 2010-10-15 16:27 JmolApplet0_i18n_zh_TW.jar
-rw-r--r-- 1 root root 905091 2010-10-15 16:27 JmolApplet0.jar
-rw-r--r-- 1 root root 54184 2010-10-15 16:27 JmolApplet0_Minimize.jar
-rw-r--r-- 1 root root 33887 2010-10-15 16:27 JmolApplet0_Popup.jar
-rw-r--r-- 1 root root 17735 2010-10-15 16:27 JmolApplet0_ReadersCifPdb.jar
-rw-r--r-- 1 root root 4583 2010-10-15 16:27 JmolApplet0_ReadersMolXyz.jar
-rw-r--r-- 1 root root 12210 2010-10-15 16:27 JmolApplet0_ReadersMore.jar
-rw-r--r-- 1 root root 88229 2010-10-15 16:27 JmolApplet0_ReadersQuantum.jar
-rw-r--r-- 1 root root 14385 2010-10-15 16:27 JmolApplet0_ReadersSimple.jar
-rw-r--r-- 1 root root 28701 2010-10-15 16:27 JmolApplet0_ReadersXml.jar
-rw-r--r-- 1 root root 17746 2010-10-15 16:27 JmolApplet0_ReadersXtal.jar
-rw-r--r-- 1 root root 61234 2010-10-15 16:27 JmolApplet0_ShapeBio.jar
-rw-r--r-- 1 root root 53908 2010-10-15 16:27 JmolApplet0_ShapeSpecial.jar
-rw-r--r-- 1 root root 141142 2010-10-15 16:27 JmolApplet0_ShapeSurface.jar
-rw-r--r-- 1 root root 37644 2010-10-15 16:27 JmolApplet0_Smiles.jar
-rw-r--r-- 1 root root 46586 2010-10-15 16:27 JmolApplet0_Symmetry.jar
-rw-r--r-- 1 root root 12924 2010-10-15 16:27 JmolAppletSigned0_Console.jar
-rw-r--r-- 1 root root 11692 2010-10-15 16:27 JmolAppletSigned0_i18n_ar.jar
-rw-r--r-- 1 root root 22617 2010-10-15 16:27 JmolAppletSigned0_i18n_ca.jar
-rw-r--r-- 1 root root 26477 2010-10-15 16:27 JmolAppletSigned0_i18n_cs.jar
-rw-r--r-- 1 root root 25469 2010-10-15 16:27 JmolAppletSigned0_i18n_da.jar
-rw-r--r-- 1 root root 25371 2010-10-15 16:27 JmolAppletSigned0_i18n_de.jar
-rw-r--r-- 1 root root 5377 2010-10-15 16:27 JmolAppletSigned0_i18n_el.jar
-rw-r--r-- 1 root root 17456 2010-10-15 16:27 JmolAppletSigned0_i18n_en_GB.jar
-rw-r--r-- 1 root root 26224 2010-10-15 16:27 JmolAppletSigned0_i18n_es.jar
-rw-r--r-- 1 root root 8408 2010-10-15 16:27 JmolAppletSigned0_i18n_et.jar
-rw-r--r-- 1 root root 25673 2010-10-15 16:27 JmolAppletSigned0_i18n_fr.jar
-rw-r--r-- 1 root root 21902 2010-10-15 16:27 JmolAppletSigned0_i18n_hu.jar
-rw-r--r-- 1 root root 25626 2010-10-15 16:27 JmolAppletSigned0_i18n_id.jar
-rw-r--r-- 1 root root 25830 2010-10-15 16:27 JmolAppletSigned0_i18n_it.jar
-rw-r--r-- 1 root root 21448 2010-10-15 16:27 JmolAppletSigned0_i18n_ko.jar
-rw-r--r-- 1 root root 11155 2010-10-15 16:27 JmolAppletSigned0_i18n_nb.jar
-rw-r--r-- 1 root root 24539 2010-10-15 16:27 JmolAppletSigned0_i18n_nl.jar
-rw-r--r-- 1 root root 10887 2010-10-15 16:27 JmolAppletSigned0_i18n_oc.jar
-rw-r--r-- 1 root root 15101 2010-10-15 16:27 JmolAppletSigned0_i18n_pl.jar
-rw-r--r-- 1 root root 24587 2010-10-15 16:27 JmolAppletSigned0_i18n_pt_BR.jar
-rw-r--r-- 1 root root 15622 2010-10-15 16:27 JmolAppletSigned0_i18n_pt.jar
-rw-r--r-- 1 root root 11700 2010-10-15 16:27 JmolAppletSigned0_i18n_ru.jar
-rw-r--r-- 1 root root 4935 2010-10-15 16:27 JmolAppletSigned0_i18n_sl.jar
-rw-r--r-- 1 root root 12419 2010-10-15 16:27 JmolAppletSigned0_i18n_sv.jar
-rw-r--r-- 1 root root 9125 2010-10-15 16:27 JmolAppletSigned0_i18n_ta.jar
-rw-r--r-- 1 root root 23012 2010-10-15 16:27 JmolAppletSigned0_i18n_tr.jar
-rw-r--r-- 1 root root 28463 2010-10-15 16:27 JmolAppletSigned0_i18n_uk.jar
-rw-r--r-- 1 root root 24985 2010-10-15 16:27 JmolAppletSigned0_i18n_zh_CN.jar
-rw-r--r-- 1 root root 26786 2010-10-15 16:27 JmolAppletSigned0_i18n_zh_TW.jar
-rw-r--r-- 1 root root 1009373 2010-10-15 16:27 JmolAppletSigned0.jar
-rw-r--r-- 1 root root 57563 2010-10-15 16:27 JmolAppletSigned0_Minimize.jar
-rw-r--r-- 1 root root 47707 2010-10-15 16:27 JmolAppletSigned0_MultiTouch.jar
-rw-r--r-- 1 root root 35611 2010-10-15 16:27 JmolAppletSigned0_Popup.jar
-rw-r--r-- 1 root root 19198 2010-10-15 16:27
JmolAppletSigned0_ReadersCifPdb.jar
-rw-r--r-- 1 root root 5976 2010-10-15 16:27
JmolAppletSigned0_ReadersMolXyz.jar
-rw-r--r-- 1 root root 13835 2010-10-15 16:27
JmolAppletSigned0_ReadersMore.jar
-rw-r--r-- 1 root root 92179 2010-10-15 16:27
JmolAppletSigned0_ReadersQuantum.jar
-rw-r--r-- 1 root root 16321 2010-10-15 16:27
JmolAppletSigned0_ReadersSimple.jar
-rw-r--r-- 1 root root 31274 2010-10-15 16:27 JmolAppletSigned0_ReadersXml.jar
-rw-r--r-- 1 root root 19370 2010-10-15 16:27
JmolAppletSigned0_ReadersXtal.jar
-rw-r--r-- 1 root root 65037 2010-10-15 16:27 JmolAppletSigned0_ShapeBio.jar
-rw-r--r-- 1 root root 56479 2010-10-15 16:27
JmolAppletSigned0_ShapeSpecial.jar
-rw-r--r-- 1 root root 146428 2010-10-15 16:27
JmolAppletSigned0_ShapeSurface.jar
-rw-r--r-- 1 root root 39656 2010-10-15 16:27 JmolAppletSigned0_Smiles.jar
-rw-r--r-- 1 root root 48668 2010-10-15 16:27 JmolAppletSigned0_Symmetry.jar
-rw-r--r-- 1 root root 22679 2010-11-22 23:24 Jmol.body.php
-rw-r--r-- 1 root root 691 2010-11-22 23:24 Jmol.i18n.php
-rw-r--r-- 1 root root 57774 2010-10-15 16:28 Jmol.js
-rw-r--r-- 1 root root 4438 2009-11-13 21:45 JmolMediaWiki.js
-rw-r--r-- 1 root root 3329 2010-11-22 23:24 Jmol.php
My LocalSettings.php just has the require_once("$IP/extensions/Jmol/Jmol.php");
The source of the page where the applet should be looks like this:
##########################################################
== File ==
<jmol>
<jmolApplet>
<title>Chair</title><color>gray</color>
<uploadedFileContents>Chair.cml</uploadedFileContents>
</jmolApplet>
</jmol>
== Inlined MDL Molfile ==
<jmol>
<jmolApplet>
<size>150</size>
<color>green</color>
<inlineContents>chair.mol
Conformational analysis
0
18 18 0 0 0 1 V2000
1.6881 2.1572 -3.0193 C 0 0 0 0 0
2.1484 3.6217 -2.9797 C 0 0 0 0 0
2.9361 3.9126 -1.6942 C 0 0 0 0 0
2.0927 3.5769 -0.4557 C 0 0 0 0 0
1.6329 2.1120 -0.4898 C 0 0 0 0 0
0.8532 1.8102 -1.7778 C 0 0 0 0 0
2.5807 1.4887 -3.0652 H 0 0 0 0 0
1.0897 1.9711 -3.9430 H 0 0 0 0 0
1.2578 4.2927 -3.0282 H 0 0 0 0 0
2.7791 3.8474 -3.8727 H 0 0 0 0 0
3.8725 3.3053 -1.6844 H 0 0 0 0 0
3.2413 4.9861 -1.6685 H 0 0 0 0 0
1.2005 4.2467 -0.4224 H 0 0 0 0 0
2.6835 3.7700 0.4714 H 0 0 0 0 0
0.9957 1.8928 0.4002 H 0 0 0 0 0
2.5240 1.4426 -0.4294 H 0 0 0 0 0
0.5642 0.7322 -1.8031 H 0 0 0 0 0
-0.0919 2.4039 -1.7878 H 0 0 0 0 0
1 2 1 0 0 0
1 6 1 1 0 0
1 7 1 0 0 0
1 8 1 6 0 0
2 3 1 1 0 0
2 9 1 0 0 0
2 10 1 6 0 0
3 4 1 1 0 0
3 11 1 0 0 0
3 12 1 0 0 0
4 5 1 0 0 0
4 13 1 0 0 0
4 14 1 1 0 0
5 6 1 6 0 0
5 15 1 1 0 0
5 16 1 0 0 0
6 17 1 0 0 0
6 18 1 0 0 0
M END
</inlineContents>
</jmolApplet>
</jmol>
#############################
------------------------------------------------------------------------------
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