Everybody,

Thanks for the comments.  Here's what I've learned with further testing in 
MacOS X.  I'll get to Linux next (although, I'm less worried there as support 
for Java is more robust).
1) JSmol in Firefox can read binary files without a server assist.  Note, I 
still get a not compatible popup in FireFox occasionally. Is that really true?
2) Chrome can also load binary files, but for some reason does not default 
directly to JSmol, despite the fact that it is only a 32 bit program so cannot 
use the latest 64 bit Java plugins.  In Chrome I get the yellow, you do not 
have Java installed panel.  My temporary fix is to add a link to the message 
that reloads the page with a ?USE=HTML5 appended to the URL and use that to 
reset the options for JSmol.
3) Safari cannot load binary files without a server assist in JSmol.  
Converting all files to text allows it to work locally.  On a server I think it 
works fine because I left it calling the St. Olaf server for help.  I find this 
really amusing since Apple has been in the lead when pushing to get rid of Java 
in the browser environment, yet their javascript is clearly less capable.

Another note.  FF 18 seems to have pretty fast javascript.  It handles JSmol 
pages better than most of the other browsers.

Anyway, I think I may just ignore Safari for local stuff.  Things may change by 
the time JSmol is completely settled.  I guess I can just generate .pngj files 
as I originally intended.

Jonathan
On Jan 22, 2013, at 8:13 AM, Angel Herráez wrote:

> Jonathan, there was thread about reading binary files into JSmol.
> What are your filenames? Have you tried to include .bin in the 
> filename? That should force JSmol to think it is binary
> 
> e,g,   caffeine.bin.jmol
> 
> 
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                        Dr. Jonathan H. Gutow
Chemistry Department                                 gu...@uwosh.edu
UW-Oshkosh                                           Office:920-424-1326
800 Algoma Boulevard                                 FAX:920-424-2042
Oshkosh, WI 54901
                http://www.uwosh.edu/facstaff/gutow/


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