Perfect, thank you Bob!
David
On 7 February 2013 20:43, Robert Hanson <hans...@stolaf.edu> wrote:
> If you look at org.jmol.applet.Jmol.java you will find examples of using
> scriptWait and script:
>
> case SCRIPT_WAIT:
> return viewer.scriptWait(script);
> case SCRIPT_NOWAIT:
> default:
> return viewer.script(script);
>
> This does exactly what you are looking for. The return is the result of
> output going to a String buffer.
>
> Bob
>
>
> On Wed, Feb 6, 2013 at 5:42 PM, N David Brown <hubd...@gmail.com> wrote:
>
>> Looking at AppConsole I don't think there is a way to obtain a
>> reference to the execThread used because it's package protected (I write
>> this nervously considering our last visibility modifier conversation haha).
>>
>> It'd be nice to have the methods
>>
>> execute(String)
>> executeCommandAsThread(String)
>>
>> return the ExecuteCommandThread instance instantiated, or else null if
>> none is.
>>
>> That would allow for the parent application to wait until the thread has
>> completed.
>>
>> David
>>
>>
>> On 6 February 2013 23:36, N David Brown <hubd...@gmail.com> wrote:
>>
>> Hmm if I don't use loadInline then I can't immediately retrieve the
>>> molecule from the viewer.
>>>
>>> Is there a callback mechanism for the loading method you recommended, or
>>> a way to sleep the current thread until that thread has completed?
>>>
>>> David
>>>
>>>
>>> On 6 February 2013 23:28, N David Brown <hubd...@gmail.com> wrote:
>>>
>>> Sorry - mol is a JmolMolecule instance retrieved from a Viewer instance
>>>> like so: myViewer.getModelSet().getMolecules[i].
>>>>
>>>> Thanks for the tip Bob. So if I call a load command of that format
>>>> using AppConsole#execute it will be thread-safe?
>>>>
>>>> David
>>>>
>>>> On 6 February 2013 22:52, Robert Hanson <hans...@stolaf.edu> wrote:
>>>>
>>>>> I have no idea. What's "mol" ?
>>>>>
>>>>> By the way, loadInLine is not thread-safe. It is much better to use a
>>>>> script and just enter the data as:
>>>>>
>>>>> load DATA "model mydata"
>>>>> .....mol data here...
>>>>> end "model mydata" .... more load parameters here....
>>>>>
>>>>>
>>>>>
>>>>> On Wed, Feb 6, 2013 at 4:17 PM, N David Brown <hubd...@gmail.com>wrote:
>>>>>
>>>>>> After importing a structure of N atoms from molfile format using
>>>>>> Viewer#loadInline:
>>>>>>
>>>>>> System.out.println(mol.atomCount); // 0
>>>>>> System.out.println(mol.nodes.length); // N
>>>>>>
>>>>>> Why is atomCount zero?
>>>>>>
>>>>>> David
>>>>>>
>>>>>>
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>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Robert M. Hanson
>>>>> Larson-Anderson Professor of Chemistry
>>>>> Chair, Chemistry Department
>>>>> St. Olaf College
>>>>> Northfield, MN
>>>>> http://www.stolaf.edu/people/hansonr
>>>>>
>>>>>
>>>>> If nature does not answer first what we want,
>>>>> it is better to take what answer we get.
>>>>>
>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>
>>>>>
>>>>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Chemistry Department
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
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