Rajarshi wrote:

>> Do this for me.
>>
>> Take a small XYZ file and add 1000 to each of the coordinates. First,
>> load
>> it up by itself and see what happens. Then load it up with another XYZ
>> file and see what happens.
>
> I did this (I've sent the 2 XYZ files to you off list).
>
> I took a CBrCL3 molecule and its coordinates were on the order of 1.
>
> Loaded it in Jmol - looks fine
>
> I then made another copy of this but with 1000 added to each coordinate
> and then loaded it in Jmol (File->Open).
>
> I see the same thing as when I load the first molecule - it seems to be
> in the same position (not further off or closer in) - basically no
> change in view
>
> Am I meant to see this? Or should I be seeing something else?

That is what you are supposed to see in Jmol.

I apologize ... I guess I was not clear.

I am interested in what you see in PyMOL and ? (the other package that you
mentioned)

Try the same test in PyMOL and ?


Miguel



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