Petr wrote:

> Re linking "correlation" matrix to protein structure rendering - I have
> program that converts my matrices to xyz file and the Jmol rendering is
> just fine (I am finalizing the color scheme).
> You hinted, that there might be a solution how to transfer the picked
> "atoms" in the "correlation matrix rendering" to the protein picture?

Using the JmolStatusListener API you can register a method that will
receive mouse click events.

When the user clicks on an atom you will receive the atom index.

Using the atom index, you can get its x and y coordinates.

In your case, these x & y coordinates map to your residue numbers.

This should allow you to send the appropriate script to your other Jmol
applet.


Miguel



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