Steven R. Spilatro wrote: >Angel, > Thanks for the atom description link. It appears the pdb I >am using is incorrectly structured; other files work OK. However, I >have not found a property returned by jmolgetpropertyasarray that >identifies whether an atom is part of the sidechain or backbone. Am >I overlooking something (obvious)? >Steve > > > Steve, why not just know what atom identifiers are part of side chains and what are part of the bases, then check those? It's not a long list.
> > >>Steve, >> >>With properly formatted PDB files: >>- use asterisk instead of prime >>- sugar atoms have standard ID's, so you could try to check/select >>base apart from pentose using those, or else use built-in "sidechain" >>and "backbone" keywords. >> >>I am not used to callbacks, but I think it could be done that way. >>I put a description of atom IDs on >>http://wiki.jmol.org/index.php/AtomSets >> >> >> >> >> >>------------------------------ >> >>Using Tomcat but need to do more? Need to support web services, security? >>Get stuff done quickly with pre-integrated technology to make your job easier >>Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo >>http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 >> >> >>------------------------------ >> >>_______________________________________________ >>Jmol-users mailing list >>[email protected] >>https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> >>End of Jmol-users Digest, Vol 1, Issue 1153 >>******************************************* >> >> > >Dr. Steven R. Spilatro >Chair, Department of Biology >Marietta College > > > >Using Tomcat but need to do more? Need to support web services, security? >Get stuff done quickly with pre-integrated technology to make your job easier >Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo >http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
