Let me try this one more time with a little more information. I
tried Phil Bays' suggestion and got the java embedding plug-in.
After installing it and restarting Firefox and trying to load the
page with the Jmol applet I got basically a blank page. No black box
for the applet as before. Interestingly a look at the Java log
showed nothing either. Uninstalling the java embedding plug-in
returned to the original behavior. The java applet loaded as shown
by the black box on the page. Right clicking the black box brought
up the Jmol menu which indicated no atoms had loaded. The Java log
showed the following.
MRJ Plugin for Mac OS X v1.0.1
[starting up Java Applet Security @ Fri Feb 16 11:24:29 EST 2007]
<<< ProxyClassLoader: defined LiveConnectProxy class. >>>
<<< Here're the permissions you've got: >>>
<<< [EMAIL PROTECTED] (
(java.net.SocketPermission moodle.depauw.edu connect,accept,resolve)
)
>>>
java.lang.NoSuchMethodError: doubleValue
at netscape.oji.JNIRunnable.run(Native Method)
at netscape.oji.LiveConnectProxy.run(LiveConnectProxy.java:48)
Fri Feb 16 11:24:30 EST 2007 JEP creating applet JmolApplet (http://
moodle.depauw.edu//mod/resource/type/jmol/)
WrappedAppletLoader.run(org.jmol.applet.Jmol)
English: no need for gettext wrapper
AppletRegistry.checkIn(jmolApplet0)
(C) 2006 Jmol Development
Jmol Version 10.2.0 2006-04-14 20:06
java.vendor:Apple Computer, Inc.
java.version:1.5.0_06
os.name:Mac OS X
appletDocumentBase=http://moodle.depauw.edu/mod/resource/view.php?id=115
setting color scheme to:jmol
loadImage:jmol75x29x8.gif
urlImage=jar:http://moodle.depauw.edu//mod/resource/type/jmol/
JmolApplet0.jar!/jmol75x29x8.gif
successfully loaded jmol75x29x8.gif
[EMAIL PROTECTED]
org.jmol.applet.Jmol load time = 2 seconds
FileManager.openFile(../../file.php/11/Structures/1a3n.pdb)
SmarterJmolAdapter:The Resolver thinks:null
error opening http://moodle.depauw.edu/file.php/11/Structures/1a3n.pdb
unrecognized file format
openFile(../../file.php/11/Structures/1a3n.pdb) 1093 ms
*****************************
Jeff Hansen
Department of Chemistry
DePauw University
Greencastle, IN 46135
[EMAIL PROTECTED]
*****************************
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