Hi Jeff

I have not any experience close to your situation, and I'm a Windows 
person, but sometimes a fresh brain can help.

Let's start stating what I have got from your posts:

1.- You have a problem only with Firefox, not Safari. That points to 
a Java plugin problem. However, as it has been noted, new versions of 
Firefox are reported not to need the plugin. Also, your installation 
of the plugin has't helped.

2.- The error message in the Java console looks like Jmol is not 
understanding the PDB format (it usually says "SmarterJmolAdapter:The 
Resolver thinks:pdb" instead of "SmarterJmolAdapter:The Resolver 
thinks:null"). However, this should affect Safari too, as would any 
Moodle configuration problem.

3.- I suppose you have tried other Jmol pages using your Firefox? 
That will rule out plugin problems and take us to Moodle problems.

And it seems Dean got the same on another Moodle site... So it's some 
Moodle trick?

4.- It seems that Jmol loads correctly, so it may be a Java security 
restriction specific to the Moodle environment... but again, then 
Safari shouldn't work either.

I know I am not giving any solution, but sometimes thinking aloud 
helps
--and I felt you needed some answer--.

Good luck. And make sure to write down the answer when you find it. 
The Wiki has a secton on Jmol in Moodle.





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