The error message appears in the Jmol Script Console and in the Jmol window.
I have now found that if the PDB file (6LDH) is stripped of the Header (from REMARKS to SCALE3) the monomeric protein appears. The header appears to contain the information to generate the tetramer. The very similar file 3LDH appears as a monomer even with the complete header. In any case, I have solved my problem. There is probably an issue of the file format. Thanks, -Steve Message: 2 Date: Thu, 15 Mar 2007 08:26:45 -0500 From: Bob Hanson <[EMAIL PROTECTED]> Subject: [Jmol-users] Error message- Cannot invert matrix To: [email protected] Message-ID: <[EMAIL PROTECTED]> Content-Type: text/plain; charset=ISO-8859-1; format=flowed I'm not seeing a problem. Where exactly are you seeing this error? FileManager.openFile(http://www.rcsb.org/pdb/files/6ldh.pdb,0,0,0,0) ZAP memory inuse, total, free, max: 7421856 14331904 6910048 66650112 FileManager opening http://www.rcsb.org/pdb/files/6ldh.pdb The Resolver thinks Pdb openFile(http://www.rcsb.org/pdb/files/6ldh.pdb,0,0,0,0)2032 ms frame: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Message: 3 Date: Wed, 14 Mar 2007 16:04:34 -0500 From: Steven Vik <[EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>> Subject: [Jmol-users] Error message- Cannot invert matrix To: < [email protected] <mailto:[email protected]>> Message-ID: <[EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>> Content-Type: text/plain; charset="US-ASCII" Using both the applet and the application ( jmol-11.0.RC4), I get the following error message when using the pdb file 6LDH: ScriptException:javax.vecmath.SingularMatrixExc eption: cannot invert matrix Presumably there is something unusual about this pdb file, but I can't figure out what it is. -Steve ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys-and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
