Mauricio,
the space after "/jmol-" concerns me.
Bob Hanson
Mauricio Carrillo Tripp wrote:
> Hi,
>
> I've been looking for an answer on other posts with no luck, is this
> code supposed to work?
>
> <script type="text/javascript">
> jmolInitialize("../jmol- 11.0.1/");
> jmolSetAppletColor("white");
> jmolApplet(512);
> jmolScript("load vdb/1stm.pdb;cpk off;wireframe
> off;cartoon on;color structure;",0);
> </script>
>
> If I include "load... ;... " on the jmolApplet it works fine, but as
> it is it starts the applet but it doesn't load the molecule (no error
> nor messages at all).
You should definitely see something in the Java console. Have you looked
there? "jmolSetAppletColor("white") is pretty much deprecated. Just add
background white;
to your load script. There is no reason to use jmolScript right after
jmolApplet. Better is to have:
jmolInitialize("../jmol- 11.0.1/");
jmolApplet(512, "background white;load vdb/1stm.pdb;cpk
off;wireframe off;cartoon on;color structure;");
This presumes files are:
parentdir/jmol- 11.0.1/JmolApplet0*.jar
parentdir/thisdir/thispage.html
parentdir/thisdir/vdb/1stm.pdb
That sound right?
> if I only load the molecule in jmolApplet, however, it loads it fine,
> but "cpk off;..." in jmolScript is not run (no error nor messages at
> all).
>
> Is there a special place/way to call jmolScript?
> Can I call jmolScript anywhere I want in the page (inside html script
> tags or inside another js file <script src="./file.js"
> type="text/javascript"></script>) after the applet starts?
yes and no: The first script you send is best sent from the jmolApplet()
call itself, because then you can be certain that it is carried out at
the correct time -- just after the applet is created.
You cannot use <script src="./file.js" type="text/javascript"></script>
effectively "after the applet starts" because that would generally be
the execution of JavaScript before the page document is complete. More
likely you would have that just set up functions, and then later, say in
hypertext links, have something like this:
<a href="javascript:jmolScript('........')">do something</a>
Check out the pages in
http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-11 and pages
at http://jmol.sourceforge.net for examples.
Bob Hanson
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