Bob Hanson wrote:
> What a timely question! I was just drafting a message to users....
>
> Jmol users:
>
> We were all a bit confused with the new file naming, so we've decided to
> rename the applet files again -- just to thoroughly confuse you.
> Actually, this is much better. What follows refers to Jmol 11.1.36.
>
> There are four distinct options that you can use when using the Jmol
> applet. The typical user would only use one of these; we recommend the
> first.
>
> JmolApplet0*.jar
> JmolApplet.jar
> JmolAppletSigned.jar
> JmolAppletSigned0*.jar
>
> (Note: * here is a wildcard character meaning "all files starting with".)
>   

I would suggest renaming the "README.txt" file to 
"READ_ME_RIGHT_NOW_OR_ELSE_ALL_YOUR_MOLECULES_WILL_BE_CURSED.TXT" >:o  
(just remember to update the text before the cursing :-) )

Seriously now: why not organizing the zip (tar, etc) file in directories:

/
COPYRIGHT.txt
LICENSE.txt
README.txt
|
+--Jmol
|  +--jmol
|  +--jmol.bat
|  +--Jmol.jar
|  +--jmol.mac
|  +--jmol.sh
|
+--Jmol_applet
    +--Jmol.js
    +--Signed
    |  +--Multiple_files
    |  |  +--JmolAppletSigned0*.jar
    |  |  +-- ...
    |  |  +-- ...
    |  |
    |  +--Single_file
    |     +--JmolAppletSigned.jar
    |
    +--Unsigned
       +--Multiple_files
       |  +--JmolApplet0*.jar
       |  +-- ...
    |  |  +-- ...
       |
       +--Single_file
          +--JmolApplet.jar




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