Oliver, it's a bug I need to fix, but use this: connect (_c and within(1.6, coord, {0 0 0})) aromatic modify;
for good results (_c for carbon; add the word "coord" explicitly) Bob Hanson Oliver Stueker wrote: > Hi, i want to report a possible bug: > > When I load e.g. a benzene molecule (like attached benzene.xyz) and > then submit the following command on the Jmol-Console: > > connect (_carbon and within(1.6, {0 0 0})) aromatic modify; > or even only: > select carbon and within(1.6, {0 0 0}); > > Jmol hangs immediately and I can't rotate the molecule anymore. > There's even no output on the Java Console. Only Jmol-Console > sometimes reports a "pending" (as far I can see only in case of the > Applet). > > tested with: > * Jmol Applet and Application Versions 11.3.31 & 11.3.38 > and Applet 11.3.39_dev (2007-10-18 22:28) on > http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm > with the C6H6.smol from the server. > * Windows XP SP2 > * Java 1.6.0_03 and 1.5.0_13 (only Application 11.3.38) > * Firefox 2 in case of applets > > Oliver > >------------------------------------------------------------------------ > >------------------------------------------------------------------------- >This SF.net email is sponsored by: Splunk Inc. >Still grepping through log files to find problems? Stop. >Now Search log events and configuration files using AJAX and a browser. >Download your FREE copy of Splunk now >> http://get.splunk.com/ > >------------------------------------------------------------------------ > >_______________________________________________ >Jmol-users mailing list >Jmol-users@lists.sourceforge.net >https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users