Hi Carles

This sound strange indeed. I agree that it shouldn't take long.

I think that maybe the 100 kB is too long for some unknown memory, 
stack or cache (I'm just guessing). Try cutting the script file in 
several pieces and see what happens when you call them one after 
another (either manually or maybe with a master script)

Another idea: test this in the Jmol application.


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