Thank you Duan Lian and Angel. I put my pdb file into Jmol folder and It
worked. So I think Its problem is the path. Jmol is really great.
Thank you so much.
Best regards,
phan
> Message: 2
> Date: Thu, 8 Jan 2009 16:13:15 +0900
> From: "phuong h. phan" <[email protected]>
> Subject: [Jmol-users] Help
> To: [email protected]
> Message-ID:
> <[email protected]>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hi, I am new user of Jmol. I downloaded Jmol today, installed and started
> to
> use it. I want to see the protein 3D structure so I download one .pdb file
> from Protein Data Bank website. But Jmol could not show its 3D figure while
> RasMol can do it. On the screen of Jmol, It said that:
>
> java.io. File Not Found.
>
> I tried to fix it by looking into Solving Java Problem but I could not fix
> it after having tried all the ways. At least I am sure that my java version
> is updated.
>
> If you know how to fix this please help me. Thank you so much in advance.
>
> Happy New Year to you all.
> Best regards,
> Phan
> -------------- next part --------------
> An HTML attachment was scrubbed...
>
> ------------------------------
>
> Message: 3
> Date: Fri, 9 Jan 2009 14:34:08 +0800
> From: "Duan Lian" <[email protected]>
> Subject: Re: [Jmol-users] Help
> To: [email protected]
> Message-ID:
> <[email protected]>
> Content-Type: text/plain; charset=UTF-8
>
> Hi, Phan
>
> Does the path of the PDB file contains any Chinese/Japanese/Korean
> characteristics? I have seen this kind of problem before.
>
>
> Best Regards,
>
> Duan Lian
> Laboratory of Molecular Modeling and Design
> School of Pharmacy
> East China University of Science and Technology
> Shanghai, 200237, China
>
> On Thu, Jan 8, 2009 at 3:13 PM, phuong h. phan <[email protected]>
> wrote:
> > Hi, I am new user of Jmol. I downloaded Jmol today, installed and started
> to
> > use it. I want to see the protein 3D structure so I download one .pdb
> file
> > from Protein Data Bank website. But Jmol could not show its 3D figure
> while
> > RasMol can do it. On the screen of Jmol, It said that:
> >
> > java.io. File Not Found.
> >
> > I tried to fix it by looking into Solving Java Problem but I could not
> fix
> > it after having tried all the ways. At least I am sure that my java
> version
> > is updated.
> >
> > If you know how to fix this please help me. Thank you so much in advance.
> >
> > Happy New Year to you all.
> > Best regards,
> > Phan
> >
> >
> ------------------------------------------------------------------------------
> > Check out the new SourceForge.net Marketplace.
> > It is the best place to buy or sell services for
> > just about anything Open Source.
> > http://p.sf.net/sfu/Xq1LFB
> > _______________________________________________
> > Jmol-users mailing list
> > [email protected]
> > https://lists.sourceforge.net/lists/listinfo/jmol-users
> >
> >
>
>
>
> ------------------------------
>
> Message: 4
> Date: Fri, 09 Jan 2009 10:04:12 +0100
> From: "Angel Herraez" <[email protected]>
> Subject: Re: [Jmol-users] Help
> To: [email protected]
> Message-ID: <[email protected]>
> Content-Type: text/plain; charset=US-ASCII
>
> Hi Phan
> I agree with Duan.
> It may be a problem with the file path. Open the Java console and
> copy the exact error, and post it here.
>
> For a safest test, put the pdb file and the Jmol.jar file in the same
> folder, then open the script console and type
> load yourfile.pdb
> (do not use the top menu, File > Open, as that may insert the path)
>
> If that works, it's most likely a path problem. Java has problems
> with folder names that contain spaces or non-English characters; it
> converts those characters to Unicode but then either Jmol or the OS
> do not interpret them correctly. (At least in my Spanish Windows
> setup.)
>
------------------------------------------------------------------------------
This SF.net email is sponsored by:
SourcForge Community
SourceForge wants to tell your story.
http://p.sf.net/sfu/sf-spreadtheword
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
