I'm amazed that works. Doesn't that just write all the tags as text?
Also,
You can't treat a string like an array in msie-- "667766"[4] should
not work anymore in msie.
My network went down or I would test that. I realize the reason Msie
doesn't like my page is that I am missing the ?XML line. But I will
have to fix that tomorrow.
Sent from my iPhone
On May 6, 2009, at 11:17 PM, Jeff Hansen <jhan...@depauw.edu> wrote:
Bob,
You beat me to it and of course your solution is more sophisticated
than mine. For the record here is what I did.
function _jmolDocumentWrite(text) {
if (_jmol.currentDocument)
var newcontent = document.createElement('div');
newcontent.appendChild(document.createTextNode(text));
var str = '';
for (var i = 0; i < text.length; i++)
str += String(text[i]);
document.body.innerHTML=str;
// _jmol.currentDocument.write(text);
return text;
}
You can see it in action here:
http://webme.com/jhansen4/iWeb/Jmol/JmolPlusSVG.xhtml
I'll grab a copy of your revised Jmol.js and begin using that.
Thanks!
Jeff
***********************************************
Jeff Hansen
Department of Chemistry and Biochemistry
DePauw University
602 S. College Ave.
Greencastle, IN 46135
jhan...@depauw.edu
***********************************************
On May 7, 2009, at 12:01 AM, Robert Hanson wrote:
Well, you are quicker than I am. Try this:
http://chemapps.stolaf.edu/jmol/docs/examples-11/t2.xhtml
and
http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol.js
On Wed, May 6, 2009 at 8:35 PM, Jeff Hansen <jhan...@depauw.edu>
wrote:
Bob,
The idea is to use a multiple model file in Jmol, pull out the
energies of each model, and use that data to generate an svg
graph. The svg should highlight the point corresponding to the
model currently being displayed and likewise if the user clicks a
point on the svg it will highlight the point and update the jmol to
display the corresponding model. In other words, the svg will be a
graph of the energies of the models and the svg and applet will
"talk" to each other.
Currently I am using jmolInitialize, jmolApplet, jmolEval, and
jmolGetPropertyAsArray. Of course I would prefer to use jmol.js
but if necessary can do without it.
Jeff
***********************************************
Jeff Hansen
Department of Chemistry and Biochemistry
DePauw University
602 S. College Ave.
Greencastle, IN 46135
jhan...@depauw.edu
***********************************************
On May 6, 2009, at 7:52 PM, Robert Hanson wrote:
Ah, that sounds familiar. Correct. There is no "document.write" in
XHTML. Sorry. That pretty much rules it out.
As I recall Egon at one point wrote a DOM-specific XHTML version
of a page that worked with Jmol, though not Jmol.js.
But you don't necessarily have to have Jmol.js to use Jmol. You
just have to work harder to do it without.
So what is the deal with "inline SVG"?
Bob
2009/5/6 Angel Herráez <angel.herr...@uah.es>
It seems that the first hit is caused by document.write not being
supported
by XHTML (documented in several websites)
My test:
XHTML 1.0 Transitional
_jmol.currentDocument.write(text);
at line line 834 within
function _jmolDocumentWrite(text) {
throws an error in Firefox 3
No error in Opera, but no applet
Clue:
Does document.write work in XHTML?
No. Because of the way XML is defined, it is not possible to do
tricks like
this, where markup is generated by scripting while the parser is
still parsing
the markup.
You can still achieve the same effects, but you have to do it by
using the
DOM to add and delete elements.
(source: http://www.w3.org/MarkUp/2004/xhtml-faq#docwrite)
And quoting
http://jmol.sourceforge.net/docs/JmolAppletGuide.html#XHTMLSupport
the standard Jmol.js Javascript library will not work under properly
compliant XML browsers. An alternative, largely similar, but
entirely
unsupported library is available ... insert address here ...
(that JmolAppletGuide doc is old --Miguel's times? . but true
indeed)
I've tested the alternative to document.write given at
http://weston.ruter.net/projects/xhtml-document-write/
http://shepherd-interactive.googlecode.com/svn/trunk/xhtml-document-
write/xhtml-document-write.js
and, althogh it does not solve the problem, is on its way:
Opera displays a functional applet, but below it is the yellow
box that says
"you don't have Java" (generated by Jmol.js)
Firefox displays a Java box with an error, applet class not found,
and the
yellow box below it
IE8 displays nothing --seems not to like xhtml at all --even with
no Jmol
code in the page, it just displays a blank page and does a
download --of the
page?.
More to come...
---
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Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
---
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The NEW KODAK i700 Series Scanners deliver under ANY circumstances!
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KODAK i700
Series Scanner you'll get full speed at 300 dpi even with all image
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http://p.sf.net/sfu/kodak-com_______________________________________________
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KODAK i700
Series Scanner you'll get full speed at 300 dpi even with all image
processing features enabled. http://p.sf.net/sfu/kodak-com
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Kodak, there's a perfect scanner to get the job done! With the NEW KODAK i700
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