Well, you are quicker than I am. Try this:
http://chemapps.stolaf.edu/jmol/docs/examples-11/t2.xhtml
and
http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol.js
On Wed, May 6, 2009 at 8:35 PM, Jeff Hansen <jhan...@depauw.edu> wrote:
> Bob,
> The idea is to use a multiple model file in Jmol, pull out the energies of
> each model, and use that data to generate an svg graph. The svg should
> highlight the point corresponding to the model currently being displayed and
> likewise if the user clicks a point on the svg it will highlight the point
> and update the jmol to display the corresponding model. In other words, the
> svg will be a graph of the energies of the models and the svg and applet
> will "talk" to each other.
>
> Currently I am using jmolInitialize, jmolApplet, jmolEval, and
> jmolGetPropertyAsArray. Of course I would prefer to use jmol.js but if
> necessary can do without it.
>
>
> Jeff
>
> ***********************************************
> Jeff Hansen
> Department of Chemistry and Biochemistry
> DePauw University
> 602 S. College Ave.
> Greencastle, IN 46135
> jhan...@depauw.edu
> ***********************************************
>
>
> On May 6, 2009, at 7:52 PM, Robert Hanson wrote:
>
> Ah, that sounds familiar. Correct. There is no "document.write" in XHTML.
> Sorry. That pretty much rules it out.
>
> As I recall Egon at one point wrote a DOM-specific XHTML version of a page
> that worked with Jmol, though not Jmol.js.
>
> But you don't necessarily have to have Jmol.js to use Jmol. You just have
> to work harder to do it without.
>
> So what is the deal with "inline SVG"?
>
> Bob
>
>
> 2009/5/6 Angel Herráez <angel.herr...@uah.es>
>
>> It seems that the first hit is caused by document.write not being
>> supported
>> by XHTML (documented in several websites)
>>
>> My test:
>> XHTML 1.0 Transitional
>>
>> _jmol.currentDocument.write(text);
>> at line line 834 within
>> function _jmolDocumentWrite(text) {
>>
>> throws an error in Firefox 3
>> No error in Opera, but no applet
>>
>> Clue:
>> Does document.write work in XHTML?
>> No. Because of the way XML is defined, it is not possible to do tricks
>> like
>> this, where markup is generated by scripting while the parser is still
>> parsing
>> the markup.
>> You can still achieve the same effects, but you have to do it by using the
>> DOM to add and delete elements.
>> (source: http://www.w3.org/MarkUp/2004/xhtml-faq#docwrite)
>>
>>
>> And quoting
>> http://jmol.sourceforge.net/docs/JmolAppletGuide.html#XHTMLSupport
>>
>> the standard Jmol.js Javascript library will not work under properly
>> compliant XML browsers. An alternative, largely similar, but entirely
>> unsupported library is available ... insert address here ...
>> (that JmolAppletGuide doc is old --Miguel's times? .. but true indeed)
>>
>>
>> I've tested the alternative to document.write given at
>> http://weston.ruter.net/projects/xhtml-document-write/
>> http://shepherd-interactive.googlecode.com/svn/trunk/xhtml-document-
>> write/xhtml-document-write.js<http://shepherd-interactive.googlecode.com/svn/trunk/xhtml-document-%0Awrite/xhtml-document-write.js>
>>
>> and, althogh it does not solve the problem, is on its way:
>>
>> Opera displays a functional applet, but below it is the yellow box that
>> says
>> "you don't have Java" (generated by Jmol.js)
>>
>> Firefox displays a Java box with an error, applet class not found, and the
>> yellow box below it
>>
>> IE8 displays nothing --seems not to like xhtml at all --even with no Jmol
>> code in the page, it just displays a blank page and does a download --of
>> the
>> page?.
>>
>>
>> More to come...
>>
>>
>>
>>
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>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> ------------------------------------------------------------------------------
> The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your
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> Kodak, there's a perfect scanner to get the job done! With the NEW KODAK
> i700
> Series Scanner you'll get full speed at 300 dpi even with all image
> processing features enabled.
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> Kodak, there's a perfect scanner to get the job done! With the NEW KODAK
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> Series Scanner you'll get full speed at 300 dpi even with all image
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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Series Scanner you'll get full speed at 300 dpi even with all image
processing features enabled. http://p.sf.net/sfu/kodak-com
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