> Thank you for your quick response! I tried
> select within ("AE"), but I get a syntax error. The within
> command seems to take two parameters, but I am unable
> to figure what the first parameter should be.
Sorry, I didn't test it.
According to the doc, the sequence is the first parameter. The second is
the atom set on which the search will be done. Try just * or "all":
select within ("AE",*)
select within ("AE",all)
--I read it, but I thought it could be omitted--
If you want to run the search only on chain "A", then
select within ("AE", *:A)
and so on
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