Brian, find your Java console. there should be voluminous messages there.
On Fri, Dec 4, 2009 at 1:18 PM, Brian Moldover <[email protected]> wrote:
> Is this a browser issue? I get different results depending on the
> platform.
>
>
>
> *From:* Brian Moldover [mailto:[email protected]]
> *Sent:* Friday, December 04, 2009 1:12 PM
>
> *To:* '[email protected]'
> *Subject:* RE: [Jmol-users] running a rasmol script
>
>
>
> OK, I have decided it’s actually more efficient at this point to break the
> atom coloring into separate scripts per model. It also makes sense since I’m
> testing different algorithms to generate the numbers I’m using for coloring.
> So, 14 models, 14 scripts.
>
>
>
> I have an odd problem in that only the first two applets will display the
> coloring loaded by the scripts. After that, only the labels appear. Am I
> running out of memory or something?
>
>
>
> *From:* Robert Hanson [mailto:[email protected]]
> *Sent:* Friday, December 04, 2009 11:55 AM
>
> *To:* [email protected]
> *Subject:* Re: [Jmol-users] running a rasmol script
>
>
>
> you are sending the jmolScript command before you have the applet set up.
> If all you are doing is sending the same startup script to the two applets,
> just do it as I have modified below:
>
> On Fri, Dec 4, 2009 at 10:51 AM, Brian Moldover <[email protected]>
> wrote:
>
> Getting the error message: could not find applet jmolApplet0
>
> Here is the code:
> <head>
> <title>Multiple load models from pdb</title>
> <script type="text/javascript" src="jmol/Jmol.js" ></script>
> </head>
> <body>
>
> <script type="text/javascript">
> jmolInitialize("jmol");
> </script>
>
> <script type="text/javascript">
> jmolApplet(200, "load MODELS ({0}) jmol/pdb1as5.pdb;script
> jmol/Gcolors.txt", "1");
> </script>
>
> <script type="text/javascript">
> jmolApplet(200, "load MODELS ({1}) jmol/pdb1as5.pdb;script
> jmol/Gcolors.txt", "2");
> </script>
>
>
>
> On Fri, Dec 4, 2009 at 11:26 AM, Brian Moldover <[email protected]>
> wrote:
>
> Thanks, could not find the right example for jmolscript. Was struggling
> with trying to use jmolscript(script “filename”, “all”) which obviously is
> incorrect!
>
>
>
> *From:* Robert Hanson [mailto:[email protected]]
> *Sent:* Friday, December 04, 2009 11:21 AM
> *To:* [email protected]
> *Subject:* Re: [Jmol-users] running a rasmol script
>
>
>
> within Jmol:
>
> script APPLET * "background red"
>
> applies the script to all applets. So from JavaScript:
>
> jmolScript('script APPLET * "background red" ')
>
> or, if this is in a file:
>
> jmolScript('script APPLET * "script myfile.spt" ')
>
> or if you need quotes for that filename....
>
> jmolScript('script APPLET * \'script "myfile.spt" \' ')
>
> On Fri, Dec 4, 2009 at 10:07 AM, Brian Moldover <[email protected]>
> wrote:
>
> Hi all,
>
>
>
> Is there a way to load a long rasmol-type script so that it can be applied
> to multiple applets? I have a number of atom colorations for each model, and
> in the script I use restrict */n and then the atom colors, cycling (n)
> through each model. I’m using jmolapplet(“load MODELS ({}) “filename.pdb”).
>
>
>
> - Brian
>
>
>
> ------------------------------------------------------------------------------
> Join us December 9, 2009 for the Red Hat Virtual Experience,
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>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> Internal Virus Database is out of date.
> Checked by AVG - www.avg.com
> Version: 8.5.238 / Virus Database: 270.14.84/2530 - Release Date: 11/27/09
> 07:58:00
>
>
>
>
>
> ------------------------------------------------------------------------------
> Join us December 9, 2009 for the Red Hat Virtual Experience,
> a free event focused on virtualization and cloud computing.
> Attend in-depth sessions from your desk. Your couch. Anywhere.
> http://p.sf.net/sfu/redhat-sfdev2dev
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> Internal Virus Database is out of date.
> Checked by AVG - www.avg.com
> Version: 8.5.238 / Virus Database: 270.14.84/2530 - Release Date: 11/27/09
> 07:58:00
>
>
> ------------------------------------------------------------------------------
> Join us December 9, 2009 for the Red Hat Virtual Experience,
> a free event focused on virtualization and cloud computing.
> Attend in-depth sessions from your desk. Your couch. Anywhere.
> http://p.sf.net/sfu/redhat-sfdev2dev
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Join us December 9, 2009 for the Red Hat Virtual Experience,
a free event focused on virtualization and cloud computing.
Attend in-depth sessions from your desk. Your couch. Anywhere.
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