Problem is solved, although it was not obvious.
I downloaded the Opera browser just to try, and it displayed fine. So it was
something specific to IE and Firefox on certain computers. Checked the
version of Java on this machine and it was 1.6.0_16, so updated it to _17.
No change. Went in and looked at some of the Java panel options and found
that it is the default Java for IE and Firefox, but not Opera. So I think
Opera manages Java applets slightly differently. Need to look further.
At any rate, I cleared the Java cache (didn't know this even existed!) and
now it works fine in IE and Firefox on my PC.
From: Robert Hanson [mailto:[email protected]]
Sent: Friday, December 04, 2009 3:42 PM
To: [email protected]
Subject: Re: [Jmol-users] running a rasmol script
Brian, find your Java console. there should be voluminous messages there.
On Fri, Dec 4, 2009 at 1:18 PM, Brian Moldover <[email protected]> wrote:
Is this a browser issue? I get different results depending on the platform.
From: Brian Moldover [mailto:[email protected]]
Sent: Friday, December 04, 2009 1:12 PM
To: '[email protected]'
Subject: RE: [Jmol-users] running a rasmol script
OK, I have decided it's actually more efficient at this point to break the
atom coloring into separate scripts per model. It also makes sense since I'm
testing different algorithms to generate the numbers I'm using for coloring.
So, 14 models, 14 scripts.
I have an odd problem in that only the first two applets will display the
coloring loaded by the scripts. After that, only the labels appear. Am I
running out of memory or something?
From: Robert Hanson [mailto:[email protected]]
Sent: Friday, December 04, 2009 11:55 AM
To: [email protected]
Subject: Re: [Jmol-users] running a rasmol script
you are sending the jmolScript command before you have the applet set up. If
all you are doing is sending the same startup script to the two applets,
just do it as I have modified below:
On Fri, Dec 4, 2009 at 10:51 AM, Brian Moldover <[email protected]> wrote:
Getting the error message: could not find applet jmolApplet0
Here is the code:
<head>
<title>Multiple load models from pdb</title>
<script type="text/javascript" src="jmol/Jmol.js" ></script>
</head>
<body>
<script type="text/javascript">
jmolInitialize("jmol");
</script>
<script type="text/javascript">
jmolApplet(200, "load MODELS ({0}) jmol/pdb1as5.pdb;script
jmol/Gcolors.txt", "1");
</script>
<script type="text/javascript">
jmolApplet(200, "load MODELS ({1}) jmol/pdb1as5.pdb;script
jmol/Gcolors.txt", "2");
</script>
On Fri, Dec 4, 2009 at 11:26 AM, Brian Moldover <[email protected]> wrote:
Thanks, could not find the right example for jmolscript. Was struggling with
trying to use jmolscript(script "filename", "all") which obviously is
incorrect!
From: Robert Hanson [mailto:[email protected]]
Sent: Friday, December 04, 2009 11:21 AM
To: [email protected]
Subject: Re: [Jmol-users] running a rasmol script
within Jmol:
script APPLET * "background red"
applies the script to all applets. So from JavaScript:
jmolScript('script APPLET * "background red" ')
or, if this is in a file:
jmolScript('script APPLET * "script myfile.spt" ')
or if you need quotes for that filename....
jmolScript('script APPLET * \'script "myfile.spt" \' ')
On Fri, Dec 4, 2009 at 10:07 AM, Brian Moldover <[email protected]> wrote:
Hi all,
Is there a way to load a long rasmol-type script so that it can be applied
to multiple applets? I have a number of atom colorations for each model, and
in the script I use restrict */n and then the atom colors, cycling (n)
through each model. I'm using jmolapplet("load MODELS ({}) "filename.pdb").
- Brian
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If nature does not answer first what we want,
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Join us December 9, 2009 for the Red Hat Virtual Experience,
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_______________________________________________
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Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
Internal Virus Database is out of date.
Checked by AVG - www.avg.com
Version: 8.5.238 / Virus Database: 270.14.84/2530 - Release Date: 11/27/09
07:58:00
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Join us December 9, 2009 for the Red Hat Virtual Experience,
a free event focused on virtualization and cloud computing.
Attend in-depth sessions from your desk. Your couch. Anywhere.
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https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
Internal Virus Database is out of date.
Checked by AVG - www.avg.com
Version: 8.5.238 / Virus Database: 270.14.84/2530 - Release Date: 11/27/09
07:58:00
------------------------------------------------------------------------------
Join us December 9, 2009 for the Red Hat Virtual Experience,
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