Fixed for Jmol 11.8.19 and Jmol 11.9.31. Files for 11.9 will be uploaded
soon to http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.zip;
release of 11.8.19 will be later this week.
Bob
On Wed, Feb 24, 2010 at 3:33 PM, Robert Hanson <hans...@stolaf.edu> wrote:
> Hmm, yeah, that's a bug... The cheese-puff effect is because you have
> defined the size of the cartoon in the range after the specified residues,
> and Jmol has removed the helix description for those residues. Basically, if
>
> 10-20 are helixes
> and you display cartoons and then redefine a subset of the structure with
>
> select *;cartoons on
> structure helix {12-13}
>
> then 10-11 are one helix, 12-13 are another helix, and 14-20 are no longer
> any structure.
>
> What you are saying is that 14-20 should still be helix. I agree.
>
> The reason it works with ribbon is because with ribbon all the structures
> are the same size. With cartoons you have smaller non-helix, non-strand
> sections.
>
> I'll look into that.
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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