Hi Nick

I think you can do it by including the model/frame spec in the atom expression, 
either */1, 
*/2 syntax or model=1.1, model=1.2

Say

connect 1.0 1.2 (carbon and model<3) (hydrogen and model<3) single 
connect 1.0 1.2 (carbon and model>=3) (hydrogen and model>=3) partial
connect 1.0 1.2 (carbon and model>=5) (hydrogen and model>=5) delete


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