I was using the compare command to visualize how the monomers of an asymmetric
homodimer are related.
So I loaded an edited version of 3lqq into the Jmol application (vers
12.0.RC12). (The file is at http://drop.io/tykyjxt/asset/3lqqab-pdb )
Then I ran the following commands by entering one at a time (but you can enter
them all at once too and see the same thing):
model all;
save coord init;
compare {1.1} {1.2} rotate translate;
restore coord init;
In the end, I got what I assume is an undesired result where model 1 wound
parts of itself in the initial position to itself to its final positions after
the compare step? The distorted result looks similar to motion blur. Did I do
something wrong or because there are connect records in the restore coord
command acts oddly?
Thanks,
Wayne
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