Ah, yes. Not sending the signal to recalculate shapes after restore. For
now, add this after the restore:
select *;translateselected {0 0 0}
That sends the signal that the atoms have moved positions and that the
cartoon has to be recalculated.
On Sun, May 23, 2010 at 9:47 PM, Wayne Decatur <[email protected]> wrote:
> I was using the compare command to visualize how the monomers of an
> asymmetric homodimer are related.
> So I loaded an edited version of 3lqq into the Jmol application (vers
> 12.0.RC12). (The file is at http://drop.io/tykyjxt/asset/3lqqab-pdb )
>
> Then I ran the following commands by entering one at a time (but you can
> enter them all at once too and see the same thing):
>
> model all;
> save coord init;
> compare {1.1} {1.2} rotate translate;
> restore coord init;
>
> In the end, I got what I assume is an undesired result where model 1 wound
> parts of itself in the initial position to itself to its final positions
> after the compare step? The distorted result looks similar to motion blur.
> Did I do something wrong or because there are connect records in the restore
> coord command acts oddly?
>
> Thanks,
> Wayne
>
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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