looks like that works, but I'm not very satisfied with the conformational outcome!
On Wed, Jun 2, 2010 at 8:35 AM, Robert Hanson <hans...@stolaf.edu> wrote: > that didn't work, though. Try putting < > around that url. Does this work? > > > < > http://chemagic.com/web_molecules/script_page_large.aspx?smiles=...@h]%28cccc%28c%29c%29[c@H]1CC[C@@H]2[C@@]1%28c...@h]3[c@H]2CCC4[C@@]3%28CCCC4%29C%29C > > > > > > > On Tue, Jun 1, 2010 at 8:47 PM, Otis Rothenberger > <osrot...@chemagic.com>wrote: > >> Bob, >> >> This is the cat's meow. Thanks for the help. I'm still stuck with a server >> side approach (AJAX very frustrating!), but the "Jmol load completed" >> approach seems to work. Cholestane is below. What a slick way to communicate >> 3D models via email: >> >> http://chemagic.com/web_molecules/script_page_large.aspx?smiles=...@h >> ]%28cccc%28c%29c%2...@h]1cc[c@@H]2[C@@]1%28c...@h]3[c@H]2CCC4[C@ >> @]3%28CCCC4%29C%29C >> >> For the JME applet on our page, I'm now using a choice of two load links - >> jmeFile or smiles. >> >> I'm interested in how the above link works on Mac. Also, note that the >> jmol javascript command does not work with Windows MSIE 8, so the above link >> does not work on MSIE. On this problem, MSIE ignores the following from the >> console: >> >> javascript alert("rats") >> >> The message returned is: >> >> evalintermediatevaluetoreturn = eval >> ( << "!!_jmol.noEval" ) >> >> Chrome and Firefox work just fine - link load and simple alert. >> Unfortunately, MSIE never sees the Jmol loaded function. >> >> I think the stereochemisrty of cholestane transferred correctly. >> >> Otis >> >> >> >> >> >> >> On 6/1/2010 12:37 PM, Robert Hanson wrote: >> >> >> >> On Tue, Jun 1, 2010 at 9:03 AM, Otis Rothenberger >> <osrot...@chemagic.com>wrote: >> >>> Bob, >>> >>> You may have told me before, but I forget. How do you signal JavaScript >>> that the Jmol applet is loaded? I've tried putting a Jmol javascript command >>> into the Jmol load script, but MSIE seems to ignore this. >>> >>> >> jmolApplet(300, "load xxxx;javascript 'loadDone()' ") >> >> >> Sorry -- my error -- in this case you need double quotes or no quotes, not >> single quotes (because it is in the class of commands such as echo and >> message. That should read: >> >> jmolApplet(300, 'load xxxx;javascript "loadDone()" ') >> >> >> >> >> >>> AJAX would be nice, but I can't get past the cross domain security issue >>> with the unsigned applet. The signed applet scares many users, so I'm using >>> my server to get past this issue. Unfortunately, this means each SMILES to >>> mofile is a new load on my page. >>> >> >> AJAX would be perfect. Just have the applet issue the above loadDone() >> function, and then have the AJAX just return the data as text from IU to a >> JavaScript function. I know, it's tricky to do this right with different >> browsers.... >> >> >> >>> >>> Getting the returned molfile into into a JavaSript variable is a bit >>> convoluted with ASP.NET, but it's doable. Normally this is not a >>> problem, but the line feeds create a problem in the case of the molfile. I >>> have to go to a hidden field and then transfer to a JavaScript variable. >>> >> >> Sounds retro. >> >> >>> >>> Anyway, with the above stage set, I just need to be able to hold the >>> JavaScript load to Jmol off until the applet is loaded. >>> >> >> right - switch those quotes. >> >> >>> >>> Otis >>> >> >> >> >> ------------------------------------------------------------------------------ >> >> >> _______________________________________________ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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