I can't imagine that anything having to do with the creation of the
isosurface from a JVXL file has anything to do with atom selection. But,
yes, mapping would probably be that way. Right.... For instance?....
On Sun, Aug 29, 2010 at 12:46 AM, Frieda Reichsman <frieda...@mac.com>wrote:
> Hi,
>
> Does the display of an isosurface (the area it covers) vary depending on
> what is selected at the time you call the jvxl file? I don't recall this,
> but it is true in 12.0.8 and 12.0.10. I expect the surface in a jvxl file to
> be the same surface all the time... but perhaps somehow I have been lucky
> enough not to trip over this before.
>
> Or perhaps it varies when you are mapping something to the surface, e.g.,
> isosurface surf1 "3d/finalsurface.jvxl" map property_x color translucent -1
> colorscheme "user";
> but then I would expect the color might vary with the selection, but not
> the surface itself.
>
> Frieda
>
>
>
> On Aug 27, 2010, at 3:47 PM, Robert Hanson wrote:
>
> Jmol users --
>
> The isosurface/JVXL problems in 12.0 and 12.1 have been fixed. (Jmol 12
> could crash opening older nonXML JVXL files.)
>
> http:/chemapps.stolaf.edu/jmol/docs/examples-12/Jmol-12.zip
>
> 12.0.10 will have that in it, probably next week.
>
> -- Bob
>
> On Mon, Aug 23, 2010 at 8:41 AM, Pshemak Maslak <p...@chem.psu.edu> wrote:
>
>> Hello,
>>
>>
>> 4. 12.08 has difficulty in displaying jvxl file written by 11.8. It does
>> it very slowly (several minutes) and --after finally loading -- the
>> model cannot be interacted with. I have encountered only one example of
>> this difficulty, and the jvxl file re-written with 12.08 Jmol works
>> fine. Could this have anything to do with the changes in the spartan
>> file reader? (my jvxl files are based on smol spartan files)
>>
>>
>> PM
>>
>>
>>
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>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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