So I think we could set some slab option to be dependent upon zoom. For
example:
slab 5.0
a decimal here would indicate that at whatever zoom level you are at, the
slab would be set to be wherever the visual range is 5.0 Angstroms.
Something like that?
On Fri, Sep 3, 2010 at 11:10 AM, Alexander Rose <alexander.r...@weirdbyte.de
> wrote:
> Hi,
>
> ----- Ursprüngliche Mail -----
> > Von: "Robert Hanson" <hans...@stolaf.edu>
> > An: jmol-users@lists.sourceforge.net
> > Gesendet: Freitag, 3. September 2010 16:46:50
> > Betreff: Re: [Jmol-users] camera dependent slab setting
> > It seems to me that is what the standard SLAB command is for. Right?
> >
>
> In a way, but it's static, the slab is not dependent on the zoom. So when I
> zoom in more deeply, I would have to adjust the slab setting to show less,
> and when I zoom out to show more again. This fine when creating images or
> focusing on one area, but when exploring a larger part of a protein it
> becomes annoying and I miss such a feature as it is available in other
> viewers.
>
>
> Best
> Alexander
>
> > If you use
> >
> > slab on
> > slab 60 # or whatever
> > set slabByAtom
> >
> > it might be very close to what you are talking about.
> >
> > Bob
> >
> >
> >
> >
> > On Fri, Sep 3, 2010 at 9:36 AM, Alexander Rose <
> > alexander.r...@weirdbyte.de > wrote:
> >
> >
> > Hi Bob,
> >
> > I set up a web page to clarify what I mean:
> > http://weirdbyte.de/jmol-test/html/nav.html
> >
> > There are three applet, showing a protein in the same orientation. The
> > first applet shows the protein in the normal - non navigation - mode
> > and has some atom obscuring most of the rest. The second applet is in
> > navigation mode and has the default visualRange = 5 setting. According
> > to the documentation this results in "any object in a plane that is
> > less than 5.0 Angstroms across will be clipped automatically". And it
> > works, giving a beautiful clear view, this is what I would like for
> > the non navigation mode, too!. Applet 3 then is also in navigation
> > mode but with visualRange set to 1 so that the notorious atom is not
> > clipped automatically and obscures the view again, the reflection is
> > nice though. I hope this makes my intention clear.
> >
> >
> > Best
> > Alexander
> >
> >
> > ps: congrats for your jmol related publication!
> >
> >
> > ----- Ursprüngliche Mail -----
> > > Von: "Robert Hanson" < hans...@stolaf.edu >
> > > An: jmol-users@lists.sourceforge.net
> > > Gesendet: Mittwoch, 25. August 2010 15:58:20
> >
> >
> >
> > > Betreff: Re: [Jmol-users] camera dependent slab setting
> > > I thought that was what you meant -- the equivalent of visualRange
> > > but
> > > for standard mode.
> > >
> > >
> > > On Wed, Aug 25, 2010 at 7:57 AM, Alexander Rose <
> > > alexander.r...@weirdbyte.de > wrote:
> > >
> > >
> > > Hi,
> > >
> > > I tried rotationRadius, but it has not the effect visualRange has.
> > > In
> > > fact I do not really understand the effect, apart from somehow
> > > setting
> > > the zoom and the possible zoom range. That is with 12.0.8.
> > >
> > >
> > > Alex
> > >
> > >
> > > ----- Ursprüngliche Mail -----
> > > > Von: "Robert Hanson" < hans...@stolaf.edu >
> > > > An: jmol-users@lists.sourceforge.net
> > > > Gesendet: Dienstag, 24. August 2010 22:24:17
> > >
> > > > Betreff: Re: [Jmol-users] camera dependent slab setting
> > >
> > >
> > >
> > > > Indeed!
> > > >
> > > > set rotationRadius (Angstroms)
> > > >
> > > >
> > > >
> > > > Sets the nominal rotation radius for the model effectively setting
> > > > the
> > > > size of the model at zoom 100 . Normally set to the radius that
> > > > will
> > > > contain within the screen the entire model when rotated relative
> > > > to
> > > > the default rotation center.
> > > >
> > > >
> > > >
> > > > :)
> > > >
> > > > Bob
> > > >
> > > >
> > > >
> > > > On Mon, Aug 23, 2010 at 5:16 AM, Alexander Rose <
> > > > alexander.r...@weirdbyte.de > wrote:
> > > >
> > > >
> > > >
> > > > Because its such a different experience I came to think that
> > > > something
> > > > like visualRange would be useful for the non nav mode?!
> > > >
> > > >
> > > > Best
> > > > Alexander
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > > --
> > > > Robert M. Hanson
> > > > Professor of Chemistry
> > > > St. Olaf College
> > > > 1520 St. Olaf Ave.
> > > > Northfield, MN 55057
> > > > http://www.stolaf.edu/people/hansonr
> > > > phone: 507-786-3107
> > > >
> > > >
> > > > If nature does not answer first what we want,
> > > > it is better to take what answer we get.
> > > >
> > > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> > > >
> > > >
> ------------------------------------------------------------------------------
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> > >
> > >
> > >
> > > --
> > > Robert M. Hanson
> > > Professor of Chemistry
> > > St. Olaf College
> > > 1520 St. Olaf Ave.
> > > Northfield, MN 55057
> > > http://www.stolaf.edu/people/hansonr
> > > phone: 507-786-3107
> > >
> > >
> > > If nature does not answer first what we want,
> > > it is better to take what answer we get.
> > >
> > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> > >
> > >
> ------------------------------------------------------------------------------
> > > Sell apps to millions through the Intel(R) Atom(Tm) Developer
> > > Program
> > > Be part of this innovative community and reach millions of netbook
> > > users
> > > worldwide. Take advantage of special opportunities to increase
> > > revenue
> > > and
> > > speed time-to-market. Join now, and jumpstart your future.
> > > http://p.sf.net/sfu/intel-atom-d2d
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> >
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> >
> >
> > --
> > Robert M. Hanson
> > Professor of Chemistry
> > St. Olaf College
> > 1520 St. Olaf Ave.
> > Northfield, MN 55057
> > http://www.stolaf.edu/people/hansonr
> > phone: 507-786-3107
> >
> >
> > If nature does not answer first what we want,
> > it is better to take what answer we get.
> >
> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> >
> >
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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