Hi,
Am 03.09.2010 um 18:49 schrieb Robert Hanson:
> So I think we could set some slab option to be dependent upon zoom. For
> example:
>
> slab 5.0
>
> a decimal here would indicate that at whatever zoom level you are at, the
> slab would be set to be wherever the visual range is 5.0 Angstroms.
>
> Something like that?
>
that sounds great!
>
> On Fri, Sep 3, 2010 at 11:10 AM, Alexander Rose <alexander.r...@weirdbyte.de>
> wrote:
> Hi,
>
> ----- Ursprüngliche Mail -----
> > Von: "Robert Hanson" <hans...@stolaf.edu>
> > An: jmol-users@lists.sourceforge.net
> > Gesendet: Freitag, 3. September 2010 16:46:50
> > Betreff: Re: [Jmol-users] camera dependent slab setting
> > It seems to me that is what the standard SLAB command is for. Right?
> >
>
> In a way, but it's static, the slab is not dependent on the zoom. So when I
> zoom in more deeply, I would have to adjust the slab setting to show less,
> and when I zoom out to show more again. This fine when creating images or
> focusing on one area, but when exploring a larger part of a protein it
> becomes annoying and I miss such a feature as it is available in other
> viewers.
>
>
> Best
> Alexander
>
> > If you use
> >
> > slab on
> > slab 60 # or whatever
> > set slabByAtom
> >
> > it might be very close to what you are talking about.
> >
> > Bob
> >
> >
> >
> >
> > On Fri, Sep 3, 2010 at 9:36 AM, Alexander Rose <
> > alexander.r...@weirdbyte.de > wrote:
> >
> >
> > Hi Bob,
> >
> > I set up a web page to clarify what I mean:
> > http://weirdbyte.de/jmol-test/html/nav.html
> >
> > There are three applet, showing a protein in the same orientation. The
> > first applet shows the protein in the normal - non navigation - mode
> > and has some atom obscuring most of the rest. The second applet is in
> > navigation mode and has the default visualRange = 5 setting. According
> > to the documentation this results in "any object in a plane that is
> > less than 5.0 Angstroms across will be clipped automatically". And it
> > works, giving a beautiful clear view, this is what I would like for
> > the non navigation mode, too!. Applet 3 then is also in navigation
> > mode but with visualRange set to 1 so that the notorious atom is not
> > clipped automatically and obscures the view again, the reflection is
> > nice though. I hope this makes my intention clear.
> >
> >
> > Best
> > Alexander
> >
> >
> > ps: congrats for your jmol related publication!
> >
> >
> > ----- Ursprüngliche Mail -----
> > > Von: "Robert Hanson" < hans...@stolaf.edu >
> > > An: jmol-users@lists.sourceforge.net
> > > Gesendet: Mittwoch, 25. August 2010 15:58:20
> >
> >
> >
> > > Betreff: Re: [Jmol-users] camera dependent slab setting
> > > I thought that was what you meant -- the equivalent of visualRange
> > > but
> > > for standard mode.
> > >
> > >
> > > On Wed, Aug 25, 2010 at 7:57 AM, Alexander Rose <
> > > alexander.r...@weirdbyte.de > wrote:
> > >
> > >
> > > Hi,
> > >
> > > I tried rotationRadius, but it has not the effect visualRange has.
> > > In
> > > fact I do not really understand the effect, apart from somehow
> > > setting
> > > the zoom and the possible zoom range. That is with 12.0.8.
> > >
> > >
> > > Alex
> > >
> > >
> > > ----- Ursprüngliche Mail -----
> > > > Von: "Robert Hanson" < hans...@stolaf.edu >
> > > > An: jmol-users@lists.sourceforge.net
> > > > Gesendet: Dienstag, 24. August 2010 22:24:17
> > >
> > > > Betreff: Re: [Jmol-users] camera dependent slab setting
> > >
> > >
> > >
> > > > Indeed!
> > > >
> > > > set rotationRadius (Angstroms)
> > > >
> > > >
> > > >
> > > > Sets the nominal rotation radius for the model effectively setting
> > > > the
> > > > size of the model at zoom 100 . Normally set to the radius that
> > > > will
> > > > contain within the screen the entire model when rotated relative
> > > > to
> > > > the default rotation center.
> > > >
> > > >
> > > >
> > > > :)
> > > >
> > > > Bob
> > > >
> > > >
> > > >
> > > > On Mon, Aug 23, 2010 at 5:16 AM, Alexander Rose <
> > > > alexander.r...@weirdbyte.de > wrote:
> > > >
> > > >
> > > >
> > > > Because its such a different experience I came to think that
> > > > something
> > > > like visualRange would be useful for the non nav mode?!
> > > >
> > > >
> > > > Best
> > > > Alexander
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > > --
> > > > Robert M. Hanson
> > > > Professor of Chemistry
> > > > St. Olaf College
> > > > 1520 St. Olaf Ave.
> > > > Northfield, MN 55057
> > > > http://www.stolaf.edu/people/hansonr
> > > > phone: 507-786-3107
> > > >
> > > >
> > > > If nature does not answer first what we want,
> > > > it is better to take what answer we get.
> > > >
> > > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> > > >
> > > > ------------------------------------------------------------------------------
> > > > Sell apps to millions through the Intel(R) Atom(Tm) Developer
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> > >
> > >
> > > --
> > > Robert M. Hanson
> > > Professor of Chemistry
> > > St. Olaf College
> > > 1520 St. Olaf Ave.
> > > Northfield, MN 55057
> > > http://www.stolaf.edu/people/hansonr
> > > phone: 507-786-3107
> > >
> > >
> > > If nature does not answer first what we want,
> > > it is better to take what answer we get.
> > >
> > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> > >
> > > ------------------------------------------------------------------------------
> > > Sell apps to millions through the Intel(R) Atom(Tm) Developer
> > > Program
> > > Be part of this innovative community and reach millions of netbook
> > > users
> > > worldwide. Take advantage of special opportunities to increase
> > > revenue
> > > and
> > > speed time-to-market. Join now, and jumpstart your future.
> > > http://p.sf.net/sfu/intel-atom-d2d
> > > _______________________________________________
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> > > https://lists.sourceforge.net/lists/listinfo/jmol-users
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> >
> >
> > --
> > Robert M. Hanson
> > Professor of Chemistry
> > St. Olaf College
> > 1520 St. Olaf Ave.
> > Northfield, MN 55057
> > http://www.stolaf.edu/people/hansonr
> > phone: 507-786-3107
> >
> >
> > If nature does not answer first what we want,
> > it is better to take what answer we get.
> >
> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> >
> > ------------------------------------------------------------------------------
> > This SF.net Dev2Dev email is sponsored by:
> >
> > Show off your parallel programming skills.
> > Enter the Intel(R) Threading Challenge 2010.
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> > https://lists.sourceforge.net/lists/listinfo/jmol-users
>
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>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> ------------------------------------------------------------------------------
> This SF.net Dev2Dev email is sponsored by:
>
> Show off your parallel programming skills.
> Enter the Intel(R) Threading Challenge 2010.
> http://p.sf.net/sfu/intel-thread-sfd_______________________________________________
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> https://lists.sourceforge.net/lists/listinfo/jmol-users
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