Hi Bob.
On 10/10/2010 17:22, Robert Hanson wrote:
> Jmol users,
>
> Jmol now has DSSP.
{sounds of applause} - this is very nice to hear. Thanks very much all
who have made this happen.
I'll be updating the Jmol in jalview as soon as I can - I'm sure it will
please a number of our more structure oriented users. Whilst I'm on this
subject, I was wondering - is there a script or api function that allows
one to obtain the DSSP code for the residues in a model ?
I can think of some messy/fragile ways of doing this (parsing the state
dump is one way that I'd prefer not to go) but I'd prefer to have a
direct means of reading of the assignment so it can be shown on the
associated sequence in jalview. A bit of digging around suggests that
the information is available from Jmol's AlphaMonomer class within the
structure returned from the getProperty(PropertyManager.PROP_MODEL_INFO)
- does that sound like a step in the right direction ?
Jim.
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