ah--- right! Good sleuthing.
On Mon, Apr 4, 2011 at 8:49 AM, Daniel Carbajo <[email protected]>wrote:
> At last I made the crossMeasure function work! All this time spent and the
> only problem was a couple of additional curly brackets I was not writing!!!
> So the functions look like this:
>
> function crossMeasure(atomListN, atomListM){
> set measurementUnits angstroms
> set measurements 3
> font measure 16 serif bold
> var n = atomListM.length
> for (var i = 2; i <= n; i++) {
> script inline @{"measure @{{" + atomListN + ".ca/1.1}} @{{" +
> atomListM + ".ca/" + i + ".1}}"}
>
> }
> }
>
> function DELcrossMeasure(atomListN, atomListM){
> var n = atomListM.length
> for (var i = 2; i <= n; i++) {
> script inline @{"measure delete @{{" + atomListN + ".ca/1.1}} @{{"
> + atomListM + ".ca/" + i + ".1}}"}
> }
> }
>
> And I call them like this:
> $contenuto2 .= '<td><script>
> jmolCheckbox("crossMeasure(\' '.$select_r.' \',\' '.$select_rmodel.'
> \')", "DELcrossMeasure(\' '.$select_r.' \',\' '.$select_rmodel.' \')", "");
> </script></td></tr>';
>
> Fast and smooth! Thanks a lot for everything. Now how would I add an "echo"
> showing the "show measurements" output??
> Daniel
>
>
>
>
>
>
> 2011/4/1 Daniel Carbajo <[email protected]>
>
>> OK I will try it again on Monday and let you know! Thanks!
>>
>>
>> 2011/4/1 Robert Hanson <[email protected]>
>>
>>> May seem to work, but it isn't a general solution. Trust me, you need to
>>> specify models the way I showed you and use script inline.
>>>
>>>
>>> On Fri, Apr 1, 2011 at 10:19 AM, Daniel Carbajo <
>>> [email protected]> wrote:
>>>
>>>> Well it might sound strange, but what really works for me is what I send
>>>> you, i.e.: without script inline in the function, and calling the function
>>>> adding the curly brackets and the .ca to the php variables.
>>>> What I cannot make work anyhow is the other way, i.e.: with script
>>>> inline in the function, and calling the function with just the php
>>>> variables
>>>> and escaped single quotes...
>>>> It really works...
>>>>
>>>>
>>>> 2011/4/1 Robert Hanson <[email protected]>
>>>>
>>>>> well, that won't work. See my previous posts.
>>>>>
>>>>>
>>>>> On Fri, Apr 1, 2011 at 3:41 AM, Daniel Carbajo <
>>>>> [email protected]> wrote:
>>>>>
>>>>>> At the end I left it like this (without script inline):
>>>>>>
>>>>>> function crossMeasure(atomListN, atomListM){
>>>>>> set measurementUnits angstroms
>>>>>> set measurements 3
>>>>>> font measure 16 serif bold
>>>>>> var n = atomListM.length
>>>>>> for (var i = 2; i <= n; i++) {
>>>>>> measure @{atomListN[1]} @{atomListM[i]}
>>>>>> }
>>>>>> }
>>>>>>
>>>>>> function DELcrossMeasure(atomListN, atomListM){
>>>>>>
>>>>>> var n = atomListM.length
>>>>>> for (var i = 2; i <= n; i++) {
>>>>>> measure delete @{atomListN[1]} @{atomListM[i]}
>>>>>> }
>>>>>> }
>>>>>>
>>>>>>
>>>>>> And I call it like:
>>>>>> $contenuto2 .= '<td><script>
>>>>>>
>>>>>> jmolCheckbox("crossMeasure({'.$select_r.'.ca},{'.$select_rmodel.'.ca})",
>>>>>> "DELcrossMeasure({'.$select_r.'.ca},{'.$select_rmodel.'.ca})", "");
>>>>>> </script></td></tr>';
>>>>>>
>>>>>>
>>>>>> It would be nice to show the measure results anyhow, because when
>>>>>> there are more than 2 homology models, it is hard to see the distance
>>>>>> number
>>>>>> (and also because I use some labels). Any way to show the measure
>>>>>> results is
>>>>>> ok, either as an "echo", an "alert", or in a message box like in the
>>>>>> documentation examples. Which is the easiest way? Thanks a lot!
>>>>>> Daniel
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> 2011/3/31 Robert Hanson <[email protected]>
>>>>>>
>>>>>>> sure, but you wouldn't do that inside the for loop. I think you are
>>>>>>> confusing Jmol script and JavaScript. First, let's get the crossMeasure
>>>>>>> working. What's the final form of that that works?
>>>>>>>
>>>>>>>
>>>>>>> On Thu, Mar 31, 2011 at 4:48 AM, Daniel Carbajo <
>>>>>>> [email protected]> wrote:
>>>>>>>
>>>>>>>> Thanks Bob, but I cannot make it work as an echo; if you remember
>>>>>>>> the function you have helped me with these last days, I want to modify
>>>>>>>> it so
>>>>>>>> it looks something like this
>>>>>>>>
>>>>>>>> function crossMeasure(atomListN, atomListM){
>>>>>>>> set measurementUnits angstroms
>>>>>>>> set measurements 3
>>>>>>>> font measure 16 serif bold
>>>>>>>>
>>>>>>>> set echo top left
>>>>>>>> font echo 20 serif bolditalic
>>>>>>>> color echo green
>>>>>>>>
>>>>>>>> var n = atomListM.length
>>>>>>>> for (var i = 2; i <= n; i++) {
>>>>>>>> measure @{atomListN[1]} @{atomListM[i]}
>>>>>>>>
>>>>>>>> var a =
>>>>>>>> jmolGetPropertyAsArray('measurementInfo')[0].strMeasurement
>>>>>>>> echo append a ????
>>>>>>>> }
>>>>>>>> }
>>>>>>>>
>>>>>>>> Is something like that possible?
>>>>>>>>
>>>>>>>>
>>>>>>>> 2011/3/31 Robert Hanson <[email protected]>
>>>>>>>>
>>>>>>>>> Check this out:
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> jmolEvaluate('getProperty("measurementInfo")')
>>>>>>>>>
>>>>>>>>> this gives you the overall format of the measurementInfo data.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Wed, Mar 30, 2011 at 8:46 AM, Daniel Carbajo <
>>>>>>>>> [email protected]> wrote:
>>>>>>>>>
>>>>>>>>>> Hello everybody,
>>>>>>>>>> does any of you know if it is possible to display the output of
>>>>>>>>>> "show measurements" as an "echo" when using the jmol applet in a php
>>>>>>>>>> page?
>>>>>>>>>> Alternatively, do you know how to show a message box like in the
>>>>>>>>>> documentation pages (like in
>>>>>>>>>> http://chemapps.stolaf.edu/jmol/docs/examples-11/measure.htm).
>>>>>>>>>> Or, as another alternative, how to use
>>>>>>>>>> javascript:alert(jmolGetPropertyAsArray('measurementInfo')) which I
>>>>>>>>>> cannot
>>>>>>>>>> make work...
>>>>>>>>>> Thanks a lot!
>>>>>>>>>> Daniel
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> ------------------------------------------------------------------------------
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>>>>>>>>>> _______________________________________________
>>>>>>>>>> Jmol-users mailing list
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>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> Robert M. Hanson
>>>>>>>>> Professor of Chemistry
>>>>>>>>> St. Olaf College
>>>>>>>>> 1520 St. Olaf Ave.
>>>>>>>>> Northfield, MN 55057
>>>>>>>>> http://www.stolaf.edu/people/hansonr
>>>>>>>>> phone: 507-786-3107
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> If nature does not answer first what we want,
>>>>>>>>> it is better to take what answer we get.
>>>>>>>>>
>>>>>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ------------------------------------------------------------------------------
>>>>>>>>> Create and publish websites with WebMatrix
>>>>>>>>> Use the most popular FREE web apps or write code yourself;
>>>>>>>>> WebMatrix provides all the features you need to develop and
>>>>>>>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> Jmol-users mailing list
>>>>>>>>> [email protected]
>>>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> ------------------------------------------------------------------------------
>>>>>>>> Create and publish websites with WebMatrix
>>>>>>>> Use the most popular FREE web apps or write code yourself;
>>>>>>>> WebMatrix provides all the features you need to develop and
>>>>>>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Jmol-users mailing list
>>>>>>>> [email protected]
>>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Robert M. Hanson
>>>>>>> Professor of Chemistry
>>>>>>> St. Olaf College
>>>>>>> 1520 St. Olaf Ave.
>>>>>>> Northfield, MN 55057
>>>>>>> http://www.stolaf.edu/people/hansonr
>>>>>>> phone: 507-786-3107
>>>>>>>
>>>>>>>
>>>>>>> If nature does not answer first what we want,
>>>>>>> it is better to take what answer we get.
>>>>>>>
>>>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>>>
>>>>>>>
>>>>>>> ------------------------------------------------------------------------------
>>>>>>> Create and publish websites with WebMatrix
>>>>>>> Use the most popular FREE web apps or write code yourself;
>>>>>>> WebMatrix provides all the features you need to develop and
>>>>>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Jmol-users mailing list
>>>>>>> [email protected]
>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> ------------------------------------------------------------------------------
>>>>>> Create and publish websites with WebMatrix
>>>>>> Use the most popular FREE web apps or write code yourself;
>>>>>> WebMatrix provides all the features you need to develop and
>>>>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>>>>
>>>>>> _______________________________________________
>>>>>> Jmol-users mailing list
>>>>>> [email protected]
>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Robert M. Hanson
>>>>> Professor of Chemistry
>>>>> St. Olaf College
>>>>> 1520 St. Olaf Ave.
>>>>> Northfield, MN 55057
>>>>> http://www.stolaf.edu/people/hansonr
>>>>> phone: 507-786-3107
>>>>>
>>>>>
>>>>> If nature does not answer first what we want,
>>>>> it is better to take what answer we get.
>>>>>
>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>> Create and publish websites with WebMatrix
>>>>> Use the most popular FREE web apps or write code yourself;
>>>>> WebMatrix provides all the features you need to develop and
>>>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>>>
>>>>> _______________________________________________
>>>>> Jmol-users mailing list
>>>>> [email protected]
>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>
>>>>>
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> Create and publish websites with WebMatrix
>>>> Use the most popular FREE web apps or write code yourself;
>>>> WebMatrix provides all the features you need to develop and
>>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>>
>>>> _______________________________________________
>>>> Jmol-users mailing list
>>>> [email protected]
>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>
>>>>
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Professor of Chemistry
>>> St. Olaf College
>>> 1520 St. Olaf Ave.
>>> Northfield, MN 55057
>>> http://www.stolaf.edu/people/hansonr
>>> phone: 507-786-3107
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> Create and publish websites with WebMatrix
>>> Use the most popular FREE web apps or write code yourself;
>>> WebMatrix provides all the features you need to develop and
>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>
>>> _______________________________________________
>>> Jmol-users mailing list
>>> [email protected]
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>
>
>
> ------------------------------------------------------------------------------
> Create and publish websites with WebMatrix
> Use the most popular FREE web apps or write code yourself;
> WebMatrix provides all the features you need to develop and
> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
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