Is it important that it's an echo and not
getProperty measurementInfo
?
On Thu, Apr 7, 2011 at 4:13 AM, Daniel Carbajo <daniel.carb...@gmail.com>wrote:
> So everything works nice now! but still, how could I show the show
> measurements output in an echo (if possible inside the crossMeasure
> function)? Thanks!
>
>
> 2011/4/4 Robert Hanson <hans...@stolaf.edu>
>
>> ah--- right! Good sleuthing.
>>
>>
>> On Mon, Apr 4, 2011 at 8:49 AM, Daniel Carbajo
>> <daniel.carb...@gmail.com>wrote:
>>
>>> At last I made the crossMeasure function work! All this time spent and
>>> the only problem was a couple of additional curly brackets I was not
>>> writing!!! So the functions look like this:
>>>
>>> function crossMeasure(atomListN, atomListM){
>>> set measurementUnits angstroms
>>> set measurements 3
>>> font measure 16 serif bold
>>> var n = atomListM.length
>>> for (var i = 2; i <= n; i++) {
>>> script inline @{"measure @{{" + atomListN + ".ca/1.1}} @{{" +
>>> atomListM + ".ca/" + i + ".1}}"}
>>>
>>> }
>>> }
>>>
>>> function DELcrossMeasure(atomListN, atomListM){
>>> var n = atomListM.length
>>> for (var i = 2; i <= n; i++) {
>>> script inline @{"measure delete @{{" + atomListN + ".ca/1.1}}
>>> @{{" + atomListM + ".ca/" + i + ".1}}"}
>>> }
>>> }
>>>
>>> And I call them like this:
>>> $contenuto2 .= '<td><script>
>>> jmolCheckbox("crossMeasure(\' '.$select_r.' \',\' '.$select_rmodel.'
>>> \')", "DELcrossMeasure(\' '.$select_r.' \',\' '.$select_rmodel.' \')", "");
>>> </script></td></tr>';
>>>
>>> Fast and smooth! Thanks a lot for everything. Now how would I add an
>>> "echo" showing the "show measurements" output??
>>> Daniel
>>>
>>>
>>>
>>>
>>>
>>>
>>> 2011/4/1 Daniel Carbajo <daniel.carb...@gmail.com>
>>>
>>>> OK I will try it again on Monday and let you know! Thanks!
>>>>
>>>>
>>>> 2011/4/1 Robert Hanson <hans...@stolaf.edu>
>>>>
>>>>> May seem to work, but it isn't a general solution. Trust me, you need
>>>>> to specify models the way I showed you and use script inline.
>>>>>
>>>>>
>>>>> On Fri, Apr 1, 2011 at 10:19 AM, Daniel Carbajo <
>>>>> daniel.carb...@gmail.com> wrote:
>>>>>
>>>>>> Well it might sound strange, but what really works for me is what I
>>>>>> send you, i.e.: without script inline in the function, and calling the
>>>>>> function adding the curly brackets and the .ca to the php variables.
>>>>>> What I cannot make work anyhow is the other way, i.e.: with script
>>>>>> inline in the function, and calling the function with just the php
>>>>>> variables
>>>>>> and escaped single quotes...
>>>>>> It really works...
>>>>>>
>>>>>>
>>>>>> 2011/4/1 Robert Hanson <hans...@stolaf.edu>
>>>>>>
>>>>>>> well, that won't work. See my previous posts.
>>>>>>>
>>>>>>>
>>>>>>> On Fri, Apr 1, 2011 at 3:41 AM, Daniel Carbajo <
>>>>>>> daniel.carb...@gmail.com> wrote:
>>>>>>>
>>>>>>>> At the end I left it like this (without script inline):
>>>>>>>>
>>>>>>>> function crossMeasure(atomListN, atomListM){
>>>>>>>> set measurementUnits angstroms
>>>>>>>> set measurements 3
>>>>>>>> font measure 16 serif bold
>>>>>>>> var n = atomListM.length
>>>>>>>> for (var i = 2; i <= n; i++) {
>>>>>>>> measure @{atomListN[1]} @{atomListM[i]}
>>>>>>>> }
>>>>>>>> }
>>>>>>>>
>>>>>>>> function DELcrossMeasure(atomListN, atomListM){
>>>>>>>>
>>>>>>>> var n = atomListM.length
>>>>>>>> for (var i = 2; i <= n; i++) {
>>>>>>>> measure delete @{atomListN[1]} @{atomListM[i]}
>>>>>>>> }
>>>>>>>> }
>>>>>>>>
>>>>>>>>
>>>>>>>> And I call it like:
>>>>>>>> $contenuto2 .= '<td><script>
>>>>>>>>
>>>>>>>> jmolCheckbox("crossMeasure({'.$select_r.'.ca},{'.$select_rmodel.'.ca})",
>>>>>>>> "DELcrossMeasure({'.$select_r.'.ca},{'.$select_rmodel.'.ca})", "");
>>>>>>>> </script></td></tr>';
>>>>>>>>
>>>>>>>>
>>>>>>>> It would be nice to show the measure results anyhow, because when
>>>>>>>> there are more than 2 homology models, it is hard to see the distance
>>>>>>>> number
>>>>>>>> (and also because I use some labels). Any way to show the measure
>>>>>>>> results is
>>>>>>>> ok, either as an "echo", an "alert", or in a message box like in the
>>>>>>>> documentation examples. Which is the easiest way? Thanks a lot!
>>>>>>>> Daniel
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> 2011/3/31 Robert Hanson <hans...@stolaf.edu>
>>>>>>>>
>>>>>>>>> sure, but you wouldn't do that inside the for loop. I think you are
>>>>>>>>> confusing Jmol script and JavaScript. First, let's get the
>>>>>>>>> crossMeasure
>>>>>>>>> working. What's the final form of that that works?
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Thu, Mar 31, 2011 at 4:48 AM, Daniel Carbajo <
>>>>>>>>> daniel.carb...@gmail.com> wrote:
>>>>>>>>>
>>>>>>>>>> Thanks Bob, but I cannot make it work as an echo; if you remember
>>>>>>>>>> the function you have helped me with these last days, I want to
>>>>>>>>>> modify it so
>>>>>>>>>> it looks something like this
>>>>>>>>>>
>>>>>>>>>> function crossMeasure(atomListN, atomListM){
>>>>>>>>>> set measurementUnits angstroms
>>>>>>>>>> set measurements 3
>>>>>>>>>> font measure 16 serif bold
>>>>>>>>>>
>>>>>>>>>> set echo top left
>>>>>>>>>> font echo 20 serif bolditalic
>>>>>>>>>> color echo green
>>>>>>>>>>
>>>>>>>>>> var n = atomListM.length
>>>>>>>>>> for (var i = 2; i <= n; i++) {
>>>>>>>>>> measure @{atomListN[1]} @{atomListM[i]}
>>>>>>>>>>
>>>>>>>>>> var a =
>>>>>>>>>> jmolGetPropertyAsArray('measurementInfo')[0].strMeasurement
>>>>>>>>>> echo append a ????
>>>>>>>>>> }
>>>>>>>>>> }
>>>>>>>>>>
>>>>>>>>>> Is something like that possible?
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> 2011/3/31 Robert Hanson <hans...@stolaf.edu>
>>>>>>>>>>
>>>>>>>>>>> Check this out:
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> jmolEvaluate('getProperty("measurementInfo")')
>>>>>>>>>>>
>>>>>>>>>>> this gives you the overall format of the measurementInfo data.
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> On Wed, Mar 30, 2011 at 8:46 AM, Daniel Carbajo <
>>>>>>>>>>> daniel.carb...@gmail.com> wrote:
>>>>>>>>>>>
>>>>>>>>>>>> Hello everybody,
>>>>>>>>>>>> does any of you know if it is possible to display the output of
>>>>>>>>>>>> "show measurements" as an "echo" when using the jmol applet in a
>>>>>>>>>>>> php page?
>>>>>>>>>>>> Alternatively, do you know how to show a message box like in the
>>>>>>>>>>>> documentation pages (like in
>>>>>>>>>>>> http://chemapps.stolaf.edu/jmol/docs/examples-11/measure.htm).
>>>>>>>>>>>> Or, as another alternative, how to use
>>>>>>>>>>>> javascript:alert(jmolGetPropertyAsArray('measurementInfo')) which
>>>>>>>>>>>> I cannot
>>>>>>>>>>>> make work...
>>>>>>>>>>>> Thanks a lot!
>>>>>>>>>>>> Daniel
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
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>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> --
>>>>>>>>>>> Robert M. Hanson
>>>>>>>>>>> Professor of Chemistry
>>>>>>>>>>> St. Olaf College
>>>>>>>>>>> 1520 St. Olaf Ave.
>>>>>>>>>>> Northfield, MN 55057
>>>>>>>>>>> http://www.stolaf.edu/people/hansonr
>>>>>>>>>>> phone: 507-786-3107
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> If nature does not answer first what we want,
>>>>>>>>>>> it is better to take what answer we get.
>>>>>>>>>>>
>>>>>>>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> ------------------------------------------------------------------------------
>>>>>>>>>>> Create and publish websites with WebMatrix
>>>>>>>>>>> Use the most popular FREE web apps or write code yourself;
>>>>>>>>>>> WebMatrix provides all the features you need to develop and
>>>>>>>>>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> Jmol-users mailing list
>>>>>>>>>>> Jmol-users@lists.sourceforge.net
>>>>>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> ------------------------------------------------------------------------------
>>>>>>>>>> Create and publish websites with WebMatrix
>>>>>>>>>> Use the most popular FREE web apps or write code yourself;
>>>>>>>>>> WebMatrix provides all the features you need to develop and
>>>>>>>>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>>>>>>>>
>>>>>>>>>> _______________________________________________
>>>>>>>>>> Jmol-users mailing list
>>>>>>>>>> Jmol-users@lists.sourceforge.net
>>>>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> Robert M. Hanson
>>>>>>>>> Professor of Chemistry
>>>>>>>>> St. Olaf College
>>>>>>>>> 1520 St. Olaf Ave.
>>>>>>>>> Northfield, MN 55057
>>>>>>>>> http://www.stolaf.edu/people/hansonr
>>>>>>>>> phone: 507-786-3107
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> If nature does not answer first what we want,
>>>>>>>>> it is better to take what answer we get.
>>>>>>>>>
>>>>>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ------------------------------------------------------------------------------
>>>>>>>>> Create and publish websites with WebMatrix
>>>>>>>>> Use the most popular FREE web apps or write code yourself;
>>>>>>>>> WebMatrix provides all the features you need to develop and
>>>>>>>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> Jmol-users mailing list
>>>>>>>>> Jmol-users@lists.sourceforge.net
>>>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> ------------------------------------------------------------------------------
>>>>>>>> Create and publish websites with WebMatrix
>>>>>>>> Use the most popular FREE web apps or write code yourself;
>>>>>>>> WebMatrix provides all the features you need to develop and
>>>>>>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Jmol-users mailing list
>>>>>>>> Jmol-users@lists.sourceforge.net
>>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Robert M. Hanson
>>>>>>> Professor of Chemistry
>>>>>>> St. Olaf College
>>>>>>> 1520 St. Olaf Ave.
>>>>>>> Northfield, MN 55057
>>>>>>> http://www.stolaf.edu/people/hansonr
>>>>>>> phone: 507-786-3107
>>>>>>>
>>>>>>>
>>>>>>> If nature does not answer first what we want,
>>>>>>> it is better to take what answer we get.
>>>>>>>
>>>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>>>
>>>>>>>
>>>>>>> ------------------------------------------------------------------------------
>>>>>>> Create and publish websites with WebMatrix
>>>>>>> Use the most popular FREE web apps or write code yourself;
>>>>>>> WebMatrix provides all the features you need to develop and
>>>>>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Jmol-users mailing list
>>>>>>> Jmol-users@lists.sourceforge.net
>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> ------------------------------------------------------------------------------
>>>>>> Create and publish websites with WebMatrix
>>>>>> Use the most popular FREE web apps or write code yourself;
>>>>>> WebMatrix provides all the features you need to develop and
>>>>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>>>>
>>>>>> _______________________________________________
>>>>>> Jmol-users mailing list
>>>>>> Jmol-users@lists.sourceforge.net
>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Robert M. Hanson
>>>>> Professor of Chemistry
>>>>> St. Olaf College
>>>>> 1520 St. Olaf Ave.
>>>>> Northfield, MN 55057
>>>>> http://www.stolaf.edu/people/hansonr
>>>>> phone: 507-786-3107
>>>>>
>>>>>
>>>>> If nature does not answer first what we want,
>>>>> it is better to take what answer we get.
>>>>>
>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>> Create and publish websites with WebMatrix
>>>>> Use the most popular FREE web apps or write code yourself;
>>>>> WebMatrix provides all the features you need to develop and
>>>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>>>
>>>>> _______________________________________________
>>>>> Jmol-users mailing list
>>>>> Jmol-users@lists.sourceforge.net
>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>
>>>>>
>>>>
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> Create and publish websites with WebMatrix
>>> Use the most popular FREE web apps or write code yourself;
>>> WebMatrix provides all the features you need to develop and
>>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>>
>>> _______________________________________________
>>> Jmol-users mailing list
>>> Jmol-users@lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>> ------------------------------------------------------------------------------
>> Create and publish websites with WebMatrix
>> Use the most popular FREE web apps or write code yourself;
>> WebMatrix provides all the features you need to develop and
>> publish your website. http://p.sf.net/sfu/ms-webmatrix-sf
>>
>> _______________________________________________
>> Jmol-users mailing list
>> Jmol-users@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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