...of course, this is in daily flux, and one thing I haven't implemented is
the fact that you can go directly to resolver now by AJAX. I'm hoping to
get that set up for RCSB as well, and then we will have full resolver/pdb
loading by the UNSIGNED applet. Yeah!
On Wed, Apr 18, 2012 at 9:52 AM, Robert Hanson <hans...@stolaf.edu> wrote:
> Otis, forget that. Don't go there. Period. This is just what we are
> setting up now, and you are going to love it.
>
> 1) Use JmolCD.js
>
> 2) Follow the lead shown in
> http://chemapps.stolaf.edu/jmol/chemdoodle/test2.htm. You can use
> JmolCD.js to create a standard ChemDoodle canvas or a Jmol applet or have
> Jmol choose automatically based on the browser capability.
>
> 3) There is no need to have the MOL data stuffed into a variable that way.
> Just load the file from your server just like for Jmol, even if it is just
> a ChemDoodle canvas, using:
>
> applet.loadFile("xxxx")
>
>
> Bob
>
> On Wed, Apr 18, 2012 at 9:17 AM, Otis Rothenberger
> <osrot...@chemagic.com>wrote:
>
>> All,
>>
>> I know this is not a ChemDoodle list, but with all the recent ChemDoodle
>> activity on the list, I've been playing with the Web Components.
>>
>> Here's a big frustration, and maybe someone on the list can help me: If I
>> literally define a JavaScript molfile variable - e.g.:
>>
>> lsdfStr = 'CH4\nAPtclcactv04181210043D 0 0.00000 0.00000\n \n 5 4 0 0 0 0
>> 0 0 0 0999 V2000\n 0.0000 -0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 0.0000
>> -0.8900 -0.6293 H 0 0 0 0 0 0 0 0 0 0 0 0\n 0.0000 0.8900 -0.6293 H 0 0 0 0
>> 0 0 0 0 0 0 0 0\n -0.8900 -0.0000 0.6293 H 0 0 0 0 0 0 0 0 0 0 0 0\n 0.8900
>> -0.0000 0.6293 H 0 0 0 0 0 0 0 0 0 0 0 0\n 1 2 1 0 0 0 0\n 1 3 1 0 0 0 0\n
>> 1 4 1 0 0 0 0\n 1 5 1 0 0 0 0\nM END\n$$$$\n'
>>
>> then I can dynamically load it into a Transformer3D Canvas - no problem.
>>
>> If on the other hand I define lsdfStr via AJAX to Resolver, subsequent
>> use of the same load routine throws an obscure JS error - TypeError: h is
>> undefined.
>>
>> If I directly copy the returned AJAX text and paste it into a direct
>> definition of lsdfStr, the dynamic load works.
>>
>> Any thoughts would be appreciated.
>>
>> Otis
>>
>> --
>> Otis Rothenberger
>> o...@chemagic.com
>> http://chemagic.com
>>
>>
>>
>>
>>
>>
>> ------------------------------------------------------------------------------
>> Better than sec? Nothing is better than sec when it comes to
>> monitoring Big Data applications. Try Boundary one-second
>> resolution app monitoring today. Free.
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>> _______________________________________________
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>>
>>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Better than sec? Nothing is better than sec when it comes to
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