I probably forgot to update the signed applet after making that work. I can
reproduce that one here on my Mac. OK. Thanks.
On Tue, Apr 24, 2012 at 8:56 AM, Otis Rothenberger <osrot...@chemagic.com>wrote:
> Bob,
>
> I just cleared cache on Firefox Mac, and now the only "direct database
> calls - no server" error I still see is:
>
> load :smiles:CC/C=C/CC (PubChem SMILES)
>
> Otis
>
>
> --
> Otis Rothenberger
> o...@chemagic.com
> http://chemagic.com
>
>
>
>
> On Apr 24, 2012, at 9:44 AM, Robert Hanson wrote:
>
> Phil, could this be a local caching problem? I'm not seeing any problem
> with a vanilla Mac running Safari. All the .js files have been changed
> recently, and there are also new .jar files as well specifically for those
> actions.
>
> Other Mac users? http://chemapps.stolaf.edu/jmol/chemdoodle/test2.htm
>
>
>
> On Tue, Apr 24, 2012 at 6:21 AM, Philip Bays <pb...@saintmarys.edu> wrote:
>
>> Bob:
>> On my Mac, I am getting some java i/o errors using the signed applet and
>> the direct database calls; eg caffeine with map, 2-hexene smiles, aspirin.
>>
>>
>> On Apr 24, 2012, at 12:51 AM, Robert Hanson wrote:
>>
>> Dear Jmol users,
>>
>> http://chemapps.stolaf.edu/jmol/chemdoodle/test2.htm
>>
>> Needs testing on iPads, iPhones, and Android tablet.
>>
>> I have all file types loading now, I think, including direct tapping into
>> PubChem, NCI Resolver, and RCSB models and ligands all in Jmol and a
>> slightly adapted subset of ChemDoodle. No links should cause errors. (Still
>> waiting for one little hosting* *tweak at RCSB, which is requiring a bit
>> of indirect server action for keyword searches.)
>>
>> In a Java applet environment, I can load PubChem models with charges (for
>> MEP) directly from PubChem using a great new service they are rolling out
>> soon. Most happy to beta test that for them! Interesting to compare the
>> results with NCI.
>>
>> Full action requires a couple of files on a server. Which in this case is
>> at St. Olaf.
>>
>> Paul Pillot and I are fast-tracking getting the rest of Jmol into an
>> Object JavaScript format. A bit tricky, but one problem will be history: No
>> more worry about waiting for the applet to load before sending it scripts.
>> We'll just cache them until the applet is ready, then send them off
>> automatically. That will be nice!
>>
>> Bob
>>
>>
>> On Fri, Apr 13, 2012 at 12:03 AM, Robert Hanson <hans...@stolaf.edu>wrote:
>>
>>> OK. Please test!
>>>
>>> http://chemapps.stolaf.edu/jmol/chemdoodle/test2.htm
>>>
>>> -- adds loading of host-local file using
>>>
>>> MolGrabberJmol.loadFile(fileName,loadParams)
>>>
>>> of course, the loadParams business doesn't work with ChemDoodle, but
>>> perhaps it will supply reason to add such :)
>>>
>>> I notice that this does not work for machine-local (hard-drive-based)
>>> files in Chrome. I'm guessing that's a security setting.
>>>
>>> Also, actually, I couldn't get most of these to load into ChemDoodle.
>>> The CIF files seem to be unreadable in all cases, and when there is no
>>> WebGL, only MOL files are readable, not XYZ, PDB, or CIF.
>>>
>>> Kevin, now you have something to do! I'm hoping you can check that over
>>> and tell me what I'm doing wrong (actually, send me a corrected
>>> JmolCD.js!). Something odd in xxxInterpreters, I think. But I don't know
>>> what it would be.
>>>
>>> Bob
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Professor of Chemistry
>>> St. Olaf College
>>> 1520 St. Olaf Ave.
>>> Northfield, MN 55057
>>> http://www.stolaf.edu/people/hansonr
>>> phone: 507-786-3107
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>> ------------------------------------------------------------------------------
>> Live Security Virtual Conference
>> Exclusive live event will cover all the ways today's security and
>> threat landscape has changed and how IT managers can respond. Discussions
>> will include endpoint security, mobile security and the latest in malware
>> threats.
>> http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/_______________________________________________
>>
>> Jmol-users mailing list
>> Jmol-users@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>> J. Philip Bays
>> Emeritus Professor of Chemistry
>> Department of Chemistry and Physics
>> Saint Mary's College
>> Notre Dame, IN 46556
>> pb...@saintmarys.edu
>>
>>
>>
>>
>>
>>
>>
>> ------------------------------------------------------------------------------
>> Live Security Virtual Conference
>> Exclusive live event will cover all the ways today's security and
>> threat landscape has changed and how IT managers can respond. Discussions
>> will include endpoint security, mobile security and the latest in malware
>> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
>> _______________________________________________
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>>
>>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> ------------------------------------------------------------------------------
> Live Security Virtual Conference
> Exclusive live event will cover all the ways today's security and
> threat landscape has changed and how IT managers can respond. Discussions
> will include endpoint security, mobile security and the latest in malware
> threats.
> http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/_______________________________________________
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
>
>
> ------------------------------------------------------------------------------
> Live Security Virtual Conference
> Exclusive live event will cover all the ways today's security and
> threat landscape has changed and how IT managers can respond. Discussions
> will include endpoint security, mobile security and the latest in malware
> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
> _______________________________________________
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>
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
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Exclusive live event will cover all the ways today's security and
threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
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