Bob,
I just cleared cache on Firefox Mac, and now the only "direct database calls -
no server" error I still see is:
load :smiles:CC/C=C/CC (PubChem SMILES)
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Apr 24, 2012, at 9:44 AM, Robert Hanson wrote:
> Phil, could this be a local caching problem? I'm not seeing any problem with
> a vanilla Mac running Safari. All the .js files have been changed recently,
> and there are also new .jar files as well specifically for those actions.
>
> Other Mac users? http://chemapps.stolaf.edu/jmol/chemdoodle/test2.htm
>
>
>
> On Tue, Apr 24, 2012 at 6:21 AM, Philip Bays <pb...@saintmarys.edu> wrote:
> Bob:
> On my Mac, I am getting some java i/o errors using the signed applet and the
> direct database calls; eg caffeine with map, 2-hexene smiles, aspirin.
>
>
> On Apr 24, 2012, at 12:51 AM, Robert Hanson wrote:
>
>> Dear Jmol users,
>>
>> http://chemapps.stolaf.edu/jmol/chemdoodle/test2.htm
>>
>> Needs testing on iPads, iPhones, and Android tablet.
>>
>> I have all file types loading now, I think, including direct tapping into
>> PubChem, NCI Resolver, and RCSB models and ligands all in Jmol and a
>> slightly adapted subset of ChemDoodle. No links should cause errors. (Still
>> waiting for one little hosting tweak at RCSB, which is requiring a bit of
>> indirect server action for keyword searches.)
>>
>> In a Java applet environment, I can load PubChem models with charges (for
>> MEP) directly from PubChem using a great new service they are rolling out
>> soon. Most happy to beta test that for them! Interesting to compare the
>> results with NCI.
>>
>> Full action requires a couple of files on a server. Which in this case is at
>> St. Olaf.
>>
>> Paul Pillot and I are fast-tracking getting the rest of Jmol into an Object
>> JavaScript format. A bit tricky, but one problem will be history: No more
>> worry about waiting for the applet to load before sending it scripts. We'll
>> just cache them until the applet is ready, then send them off automatically.
>> That will be nice!
>>
>> Bob
>>
>>
>> On Fri, Apr 13, 2012 at 12:03 AM, Robert Hanson <hans...@stolaf.edu> wrote:
>> OK. Please test!
>>
>> http://chemapps.stolaf.edu/jmol/chemdoodle/test2.htm
>>
>> -- adds loading of host-local file using
>>
>> MolGrabberJmol.loadFile(fileName,loadParams)
>>
>> of course, the loadParams business doesn't work with ChemDoodle, but perhaps
>> it will supply reason to add such :)
>>
>> I notice that this does not work for machine-local (hard-drive-based) files
>> in Chrome. I'm guessing that's a security setting.
>>
>> Also, actually, I couldn't get most of these to load into ChemDoodle. The
>> CIF files seem to be unreadable in all cases, and when there is no WebGL,
>> only MOL files are readable, not XYZ, PDB, or CIF.
>>
>> Kevin, now you have something to do! I'm hoping you can check that over and
>> tell me what I'm doing wrong (actually, send me a corrected JmolCD.js!).
>> Something odd in xxxInterpreters, I think. But I don't know what it would be.
>>
>> Bob
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>> ------------------------------------------------------------------------------
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>
> J. Philip Bays
> Emeritus Professor of Chemistry
> Department of Chemistry and Physics
> Saint Mary's College
> Notre Dame, IN 46556
> pb...@saintmarys.edu
>
>
>
>
>
>
> ------------------------------------------------------------------------------
> Live Security Virtual Conference
> Exclusive live event will cover all the ways today's security and
> threat landscape has changed and how IT managers can respond. Discussions
> will include endpoint security, mobile security and the latest in malware
> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
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>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> ------------------------------------------------------------------------------
> Live Security Virtual Conference
> Exclusive live event will cover all the ways today's security and
> threat landscape has changed and how IT managers can respond. Discussions
> will include endpoint security, mobile security and the latest in malware
> threats.
> http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/_______________________________________________
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
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threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
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