that's what we're looking for. Thanks. If you can remember what the VERY
LAST COMMAND you were entering was, that would be helpful. It's a bug in
the script compiler, and usually this is due to typing commands into the
console that are unfinished while checking scripts as you type. I can fix
that if you can track it down. Some line that had 50 characters, I think.
On Fri, Jun 22, 2012 at 10:30 AM, Otis Rothenberger
<[email protected]>wrote:
> Rolf,
>
> Ok, I played with it until I broke it, admittedly trying to break it. When
> it broke, the Java console had traced the script actions.
>
> I'm a bit over my head here. At the break point, the console reported what
> I'm pasting at the end of this note. The break point in this case allowed
> mouse model manipulation, but no further Jmol script was allowed.
>
> Here's the report. To your eye, does this show what causes this type of
> break? By the way, the previous script command was identical to the script
> command that broke the applet. Ethane.txt is there.
>
> Otis
>
> Jmol script terminated
> script 149 started
>
> Script completed
> Jmol script terminated
> FileManager opening http://localhost:50460/CheMagic/models/ethane.txt
> network: Cache entry not found [url:
> http://localhost:50460/CheMagic/models/ethane.txt, version: null]
> network: Connecting http://localhost:50460/CheMagic/models/ethane.txt with
> proxy=DIRECT
> network: Connecting http://localhost:50460/ with proxy=DIRECT
> network: Connecting http://localhost:50460/CheMagic/models/ethane.txt with
> cookie "cmkit235=333333333"
> Exception in thread "QueueThread0"
> java.lang.StringIndexOutOfBoundsException: String index out of range: 51
> at java.lang.String.charAt(Unknown Source)
> at org.jmol.script.ScriptCompiler.lookingAtLeadingWhitespace(Unknown
> Source)
> at org.jmol.script.ScriptCompiler.compile0(Unknown Source)
> at org.jmol.script.ScriptCompiler.parseScript(Unknown Source)
> at org.jmol.script.ScriptCompiler.compile(Unknown Source)
> at org.jmol.script.ScriptEvaluator.compileScript(Unknown Source)
> at org.jmol.script.ScriptEvaluator.compileScriptString(Unknown Source)
> at org.jmol.viewer.Viewer.evalStringWaitStatus(Unknown Source)
> at org.jmol.viewer.ScriptManager$ScriptQueueRunnable.runScript(Unknown
> Source)
> at
> org.jmol.viewer.ScriptManager$ScriptQueueRunnable.runNextScript(Unknown
> Source)
> at org.jmol.viewer.ScriptManager$ScriptQueueRunnable.run(Unknown
> Source)
> at java.lang.Thread.run(Unknown Source)
>
>
> --
> Otis Rothenberger
> [email protected]
> http://chemagic.com
>
>
>
>
> On Jun 21, 2012, at 10:44 PM, Otis Rothenberger wrote:
>
> Rolf,
>
> I didn't even have Java debugging turned on. I thought it was on by
> default. I have it on now. Thanks for the suggestion.
>
> Otis
>
>
> --
> Otis Rothenberger
> [email protected]
> http://chemagic.com
>
>
>
>
> On Jun 21, 2012, at 11:24 AM, Rolf Huehne wrote:
>
> On 06/21/2012 03:43 PM, Otis Rothenberger wrote:
>
> When I "play" with our Jmol model kit application for a period of time, I
> will sometimes encounter what I'll call applet fatigue. The page does not
> lock, nor am I prevented from using mouse model manipulation, but I cannot
> issue jmolScript commands.
>
>
> My gut feel is that this is not a Jmol problem. Things that cause this
> fatigue have worked numerous times prior to the onset of a fatigue
> incident. I cannot raise the Jmol console to look at history, however.
>
>
> Does this sound like a Java memory issue? Does anyone else have experience
> with "applet fatigue?"
>
>
> I probably observed this kind of behaviour sometimes after java errors.
> Usually Jmol totally freezed but with some errors only the scripting
> engine seemed to be blocked but Jmol still reacted to some mouse actions.
>
> Do you see any error messages in the Java console if "applet fatigue"
> occurs?
>
> Regards,
> Rolf
>
>
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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