Indeed, with Jmol 13.0.12 it works as it should.
Thank you for your help.
2013/3/12 Robert Hanson <[email protected]>
> I opened that with Jmol 13.0.14 with no problem. See
> http://chemapps.stolaf.edu/jmol/temp/toadria.png
> (This is a PNGJ file -- you should be able open it in Jmol.)
>
> So I think you just need to upgrade.
>
>
> On Tue, Mar 12, 2013 at 5:38 AM, Adrià Cereto Massagué <
> [email protected]> wrote:
>
>> Hi,
>>
>> I'm having a strange problem with a CCP4 and Jmol 13.0.6.
>> I load a model from a pdb file, and then load the CCP4 file. When I do
>> this in PyMol or Coot, the model fits inside the electron density at 1
>> sigma. However, in Jmol, nothing fits. It looks like the electron density
>> is offset or something like that. If I load a CCP4 file from the EDS it
>> 'fits' as it should.
>>
>> If I couldn't get the expected result in Pymol or Coot without doing
>> anything special, I would blame the CCP4 file, but that's not the case.
>> Am I missing something?
>> Here's a link to a zip archive with all the files needed to reproduce it
>> (the PDB file, the 2 CCP4 files and a text file containing the script I use
>> to load them): http://dl.dropbox.com/u/41040783/weird_edm.zip
>>
>> Any help woulb be appreciated.
>>
>> Regards,
>>
>> Adrià
>>
>> --
>> *Adrià Cereto Massagué*
>> Ph.D Student
>> Nutrigenomics Research Group
>> Biochemistry and Biotechnology Department
>> Building N4, Campus Sescelades
>> Universitat Rovira i Virgili
>> Tarragona, Catalonia
>>
>> Languages: Català, Español, English, Français, Deutsch, Português
>>
>> Important Notice <http://www.gnu.org/philosophy/no-word-attachments.html>
>>
>>
>> ------------------------------------------------------------------------------
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>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Chemistry Department
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
> ------------------------------------------------------------------------------
> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
> endpoint security space. For insight on selecting the right partner to
> tackle endpoint security challenges, access the full report.
> http://p.sf.net/sfu/symantec-dev2dev
>
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
------------------------------------------------------------------------------
Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
endpoint security space. For insight on selecting the right partner to
tackle endpoint security challenges, access the full report.
http://p.sf.net/sfu/symantec-dev2dev
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