Hi Marius 

That looks terrific!  A great demonstration of Jmol abilities.

I will let others (Bob) reply to your technical questions.


> - Error handling

Probably by using debug levels and callbacks
http://chemapps.stolaf.edu/jmol/docs/#setdebugging
http://chemapps.stolaf.edu/jmol/docs/#setcallback


> - Script status checking

Callbacks


> - Precise repaint control so that repaint will wait for scripts that I 
> executed every frame to produce animation

See
http://chemapps.stolaf.edu/jmol/docs/#refresh
(not what you want)
And maybe also "set repaintWaitMs n", look for it under
http://chemapps.stolaf.edu/jmol/docs/#setmisc


> Confounded by the lack of documentation

http://chemapps.stolaf.edu/jmol/docs/

I know it is not very friendly, but there's a lot of information 
there. The wiki is more friendly, but far from exhaustive.
We have many users, not so many developers and documenters. 
Volunteers are always welcome tro contribute.


Finally, I think it would be great to share your production. Would 
you mind that we link to your Flickr page? I could add a link to the 
presentation mode in the Wiki, maybe in Home page > About Jmol > Jmol 
Art -- is that a suitable term?



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