Marius,
Still, what you are doing is simply standard Jmol animation. We do it all
the time, and it doesn't require any fancy interface. Just standard Jmol.
It could easily be done in JavaScript, for instance, on a web page. Fading
translucency, moving atoms, changing views and colors -- all this is very
standard. I don't see the problem.
Is the issue that you need to have real-time user interaction that
influences the next frames?
If not, all you need is a master script with REFRESH commands whenever you
want to render the results without delay or DELAY commands anytime you want
a delay (with automatic refresh).
People do this all the time.
Bob
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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