Hello Pshemak > Consider NaCl crystal structure. I have a specific Na+ in mind. Let's > say @6. Now, I want to select all chlorides that are within 6 A of that > specific Na+. How could I do that?
select _Cl and within(6.0, atomNo=6); select _Cl & within(6.0, @6); //same but shorter you might need braces {} around the atom expression > If I want to do the same, but select all chlorides that are more than 6 > but less than 12 A away from the sodium cation (@6), what would be the > command for a case like that? select _Cl & within(12.0, @6) & ! within(6.0, @6) ; > Finally, can the selected groups of atom (ions) be given a name (ID) so > they could be referred to without repeating the selection criteria? Yes, two ways: using the "define" command or using a JmolScript variable e.g. define myAtomSet _Cl and within(6.0, atomNo=6); then select myAtomSet; I'm never sure with the variables, but something like var myAtomSet = _Cl and within(6.0, atomNo=6); (you may or not need the "var" part) then select @myAtomSet; ------------------------------------------------------------------------------ Try New Relic Now & We'll Send You this Cool Shirt New Relic is the only SaaS-based application performance monitoring service that delivers powerful full stack analytics. Optimize and monitor your browser, app, & servers with just a few lines of code. Try New Relic and get this awesome Nerd Life shirt! http://p.sf.net/sfu/newrelic_d2d_may _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users