yes, lots of debugging messages should make it slower.
OK, I've isolated the problem to the Google closure compiler. Yeiks.
http://chemapps.stolaf.edu/jmol/jsmol2/test2.htm should be working now and
up to speed.
Thanks for the help!
Bob
On Fri, Aug 16, 2013 at 4:04 PM, Bays Philip <[email protected]> wrote:
> That works, albeit slower.
>
>
> On Aug 16, 2013, at 5:00 PM, Robert Hanson <[email protected]> wrote:
>
> how about this one?
>
> http://chemapps.stolaf.edu/jmol/jsmol2/test2.htm?debugcode
>
> ?
>
>
>
> On Fri, Aug 16, 2013 at 3:40 PM, Robert Hanson <[email protected]> wrote:
>
>> Well, this is going to be a tough one. I'm looking at my Mac. Two Safari
>> windows, both with http://chemapps.stolaf.edu/jmol/jsmol2/test2.htm One
>> is a single line of atoms, the other is fine. On the one that's bad,
>> sometimes I can click on a small-molecule link and it will be fine; other
>> times not. "Caffeine with MEP" works, maybe because the rendering is done
>> later due to the surface.
>>
>> I have to believe it's a threading issue. Is it possible that Safari is
>> multithreaded in JavaScript??
>>
>> Bob
>>
>>
>>
>> On Fri, Aug 16, 2013 at 3:34 PM, Otis Rothenberger <[email protected]
>> > wrote:
>>
>>> After several cache clearings, I'm still seeing the problem:
>>>
>>> Version 6.0.5 (7536.30.1)
>>>
>>> Mac OS X 10.7.5
>>>
>>> --
>>> Otis Rothenberger
>>> [email protected]
>>> http://chemagic.com
>>>
>>>
>>>
>>>
>>> On Aug 16, 2013, at 4:25 PM, Robert Hanson wrote:
>>>
>>> Hmm. Really. I'm looking at that one on my Mac now, and it is fine. Try
>>> clearing your cache.
>>>
>>>
>>> On Fri, Aug 16, 2013 at 3:22 PM, Bays Philip <[email protected]>wrote:
>>>
>>>> No. Same issue.
>>>>
>>>> On Aug 16, 2013, at 4:20 PM, Robert Hanson <[email protected]> wrote:
>>>>
>>>> does
>>>>
>>>> http://chemapps.stolaf.edu/jmol/jsmol1/test2.htm
>>>>
>>>> work?
>>>>
>>>>
>>>> On Fri, Aug 16, 2013 at 1:42 PM, Otis Rothenberger <
>>>> [email protected]> wrote:
>>>>
>>>>> If you start by loading small molecules, then all is well (except for
>>>>> the old NCI "wake-up" issue). If you then load from RCSB, you get the line
>>>>> thing. This breaks subsequent small molecule load until you reload the
>>>>> page.
>>>>>
>>>>> --
>>>>> Otis Rothenberger
>>>>> [email protected]
>>>>> http://chemagic.com
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On Aug 16, 2013, at 2:07 PM, Robert Hanson wrote:
>>>>>
>>>>> This isn't unique to RCSB, right? All structures are totally broken?
>>>>> If not, which links work?
>>>>>
>>>>>
>>>>> On Fri, Aug 16, 2013 at 11:44 AM, Bays Philip <[email protected]>wrote:
>>>>>
>>>>>> Bob:
>>>>>> I have tried this on my iPhone (since I do not have any other iOS
>>>>>> device) and it works. (I k now you are asking for speed tests, but I am
>>>>>> seeing another issue) On both my laptop and desktop (both macs) I am
>>>>>> getting "structures" that simply consist of lines in the applet,
>>>>>> particularly all things loaded from RCSB. Once in that mode, I have to
>>>>>> reload the page to get anything else to work. This is all in Safari.
>>>>>> Things work fine in firefox.
>>>>>>
>>>>>> Anyone else on a mac observing this?
>>>>>>
>>>>>>
>>>>>> On Aug 16, 2013, at 10:08 AM, Robert Hanson <[email protected]>
>>>>>> wrote:
>>>>>>
>>>>>> I would very much appreciate feedback on a new option to increase the
>>>>>> rendering speed of JSmol. It is an extension of the "wireframeRotation"
>>>>>> idea that allows a variable amount of rendering compromise while a model
>>>>>> is
>>>>>> in motion. Please try
>>>>>>
>>>>>> http://chemapps.stolaf.edu/jmol/jsmol1/jsmol.htm
>>>>>>
>>>>>> Specifically, there are three options under the applet:
>>>>>>
>>>>>> *motion rendering compromises:* fastest surface/cartoon none
>>>>>>
>>>>>> Please try those with different models -- perhaps
>>>>>> =1blu
>>>>>> caffeine with mep
>>>>>> (load +) mo homo
>>>>>> PyMOL session - dna
>>>>>> flexible fit
>>>>>>
>>>>>> dragging the model around to see
>>>>>> Q: How significant is the speed increase in "surface/cartoon" or
>>>>>> "fastest" relative to "none"?
>>>>>>
>>>>>> Q: Is this a viable solution to the iPad poor-performance problem?
>>>>>>
>>>>>> Q: Which would you recommend for the default behavior for JSmol?
>>>>>>
>>>>>> Q: Suggestions?
>>>>>>
>>>>>>
>>>>>> Bob
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Robert M. Hanson
>>>>>> Larson-Anderson Professor of Chemistry
>>>>>> St. Olaf College
>>>>>> Northfield, MN
>>>>>> http://www.stolaf.edu/people/hansonr
>>>>>>
>>>>>>
>>>>>> If nature does not answer first what we want,
>>>>>> it is better to take what answer we get.
>>>>>>
>>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>>
>>>>>> ------------------------------------------------------------------------------
>>>>>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>>>>>> It's a free troubleshooting tool designed for production.
>>>>>> Get down to code-level detail for bottlenecks, with <2% overhead.
>>>>>> Download for free and get started troubleshooting in minutes.
>>>>>>
>>>>>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk_______________________________________________
>>>>>> Jmol-users mailing list
>>>>>> [email protected]
>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>
>>>>>>
>>>>>> J. Philip Bays
>>>>>> Emeritus Professor of Chemistry
>>>>>> Department of Chemistry and Physics
>>>>>> Saint Mary's College
>>>>>> Notre Dame, IN 46556
>>>>>> [email protected]
>>>>>>
>>>>>>
>>>>>>
>>>>>> ------------------------------------------------------------------------------
>>>>>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>>>>>> It's a free troubleshooting tool designed for production.
>>>>>> Get down to code-level detail for bottlenecks, with <2% overhead.
>>>>>> Download for free and get started troubleshooting in minutes.
>>>>>>
>>>>>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk
>>>>>> _______________________________________________
>>>>>> Jmol-users mailing list
>>>>>> [email protected]
>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Robert M. Hanson
>>>>> Larson-Anderson Professor of Chemistry
>>>>> St. Olaf College
>>>>> Northfield, MN
>>>>> http://www.stolaf.edu/people/hansonr
>>>>>
>>>>>
>>>>> If nature does not answer first what we want,
>>>>> it is better to take what answer we get.
>>>>>
>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>>>>> It's a free troubleshooting tool designed for production.
>>>>> Get down to code-level detail for bottlenecks, with <2% overhead.
>>>>> Download for free and get started troubleshooting in minutes.
>>>>>
>>>>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk_______________________________________________
>>>>> Jmol-users mailing list
>>>>> [email protected]
>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>>>>> It's a free troubleshooting tool designed for production.
>>>>> Get down to code-level detail for bottlenecks, with <2% overhead.
>>>>> Download for free and get started troubleshooting in minutes.
>>>>>
>>>>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk
>>>>> _______________________________________________
>>>>> Jmol-users mailing list
>>>>> [email protected]
>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Robert M. Hanson
>>>> Larson-Anderson Professor of Chemistry
>>>> St. Olaf College
>>>> Northfield, MN
>>>> http://www.stolaf.edu/people/hansonr
>>>>
>>>>
>>>> If nature does not answer first what we want,
>>>> it is better to take what answer we get.
>>>>
>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>
>>>> ------------------------------------------------------------------------------
>>>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>>>> It's a free troubleshooting tool designed for production.
>>>> Get down to code-level detail for bottlenecks, with <2% overhead.
>>>> Download for free and get started troubleshooting in minutes.
>>>>
>>>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk_______________________________________________
>>>> Jmol-users mailing list
>>>> [email protected]
>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>
>>>>
>>>> J. Philip Bays
>>>> Emeritus Professor of Chemistry
>>>> Department of Chemistry and Physics
>>>> Saint Mary's College
>>>> Notre Dame, IN 46556
>>>> [email protected]
>>>>
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>>>> It's a free troubleshooting tool designed for production.
>>>> Get down to code-level detail for bottlenecks, with <2% overhead.
>>>> Download for free and get started troubleshooting in minutes.
>>>>
>>>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk
>>>> _______________________________________________
>>>> Jmol-users mailing list
>>>> [email protected]
>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>
>>>>
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Larson-Anderson Professor of Chemistry
>>> St. Olaf College
>>> Northfield, MN
>>> http://www.stolaf.edu/people/hansonr
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>> ------------------------------------------------------------------------------
>>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>>> It's a free troubleshooting tool designed for production.
>>> Get down to code-level detail for bottlenecks, with <2% overhead.
>>> Download for free and get started troubleshooting in minutes.
>>>
>>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk_______________________________________________
>>> Jmol-users mailing list
>>> [email protected]
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>>> It's a free troubleshooting tool designed for production.
>>> Get down to code-level detail for bottlenecks, with <2% overhead.
>>> Download for free and get started troubleshooting in minutes.
>>>
>>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk
>>> _______________________________________________
>>> Jmol-users mailing list
>>> [email protected]
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>
>>
>> --
>> Robert M. Hanson
>> Larson-Anderson Professor of Chemistry
>> St. Olaf College
>> Northfield, MN
>> http://www.stolaf.edu/people/hansonr
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> ------------------------------------------------------------------------------
> Get 100% visibility into Java/.NET code with AppDynamics Lite!
> It's a free troubleshooting tool designed for production.
> Get down to code-level detail for bottlenecks, with <2% overhead.
> Download for free and get started troubleshooting in minutes.
>
> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk_______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
> J. Philip Bays
> Emeritus Professor of Chemistry
> Department of Chemistry and Physics
> Saint Mary's College
> Notre Dame, IN 46556
> [email protected]
>
>
>
> ------------------------------------------------------------------------------
> Get 100% visibility into Java/.NET code with AppDynamics Lite!
> It's a free troubleshooting tool designed for production.
> Get down to code-level detail for bottlenecks, with <2% overhead.
> Download for free and get started troubleshooting in minutes.
> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Get 100% visibility into Java/.NET code with AppDynamics Lite!
It's a free troubleshooting tool designed for production.
Get down to code-level detail for bottlenecks, with <2% overhead.
Download for free and get started troubleshooting in minutes.
http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
