On 08/19/2013 01:19 PM, Rolf Huehne wrote: > On 08/19/2013 02:10 AM, Robert Hanson wrote: >> For example, your database shows structures. What's the best default >> orientation to show such that the longest side of the box is along X and >> the shortest depth is toward the user? >> >> rotate BEST >> > I thought that this might be an intended usage. But I didn't understand > it from the description. > > Have you compared the results with the much faster (and atom number > independent) approximation using the boundbox plane sizes, like we are > using it in the Jena3D viewer (jena3d.jenage.de)? > > Although it doesn't work perfectly for all PDB entries it works overall > quite well. And if you have to precalculate about 300.000 images for all > PDB structures it makes quite a difference if the selection of the > orientation takes milliseconds or in the range of seconds. > > Regards, > Rolf > Sorry, the address should be jena3d.fli-leibniz.de. (The "jenage.de" belongs to my current work and it slipped in accidentally.)
Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 ------------------------------------------------------------------------------ Get 100% visibility into Java/.NET code with AppDynamics Lite! It's a free troubleshooting tool designed for production. Get down to code-level detail for bottlenecks, with <2% overhead. Download for free and get started troubleshooting in minutes. http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
