Folks,
A bunch of newbie questions. I am fighting my way through the jmol site and
the script reference at http://chemapps.stolaf.edu/jmol/docs/#script and
loads of tutorials but some things are hard to find. I have Angel Herraez's
book on order, looking fwd to a complete sequential exposition of Jmol !
1. Where is the doco of label parameters %a %n etc. As in select select
atomno=722; label %a %n. There are plenty of references to "%a has been
replaced by %[atomno] at rev xx.x" but not the original list of the %x
options. (Yes, I guess I don't actually need it, just bugging me).
2. I can open the console automatically from a script with "console". Can I
size and place it ? Mainly to get it off the main render window.
3. How to pass args into a script from the command line ? I think I have
read it is not possible. _arguments are the args into a sub-script. Can
args be passed via environment variables or a control file ?
4. Can I create a directory in Jmol script ?
5. Can I do upper/lower case conversion of a string in Jmol ?
6. Is there a compact reference for just the programming language of Jmol.
It seems scattered around in places like ..
http://chemapps.stolaf.edu/jmol/docs/#jmolmath
http://chemapps.stolaf.edu/jmol/docs/#while
Many thanks, aplogies for the newbie stuff.
Background:
Mac OS X 10.6.8, Jmol 13.2.3, running from command line, loading PDB models
via URL and highlighting selected residues and their PTM attach points,
spin, write movie frames.
--
Greg Edwards,
Port Jackson Bioinformatics
[email protected]
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