Try loading a protein from the right-hand column. What do you see? Remember
when we had the odd display of simply lines on the screen several weeks ago? I
see it again. You may have to load several structures before the problem shows
up. Once it appears, you have to reload the page to get rid of it.
Now, I updated the OS today to 10.8.5 and that also updates Safari (6.0.5) so
the problem could be there.
On Sep 17, 2013, at 7:41 PM, Otis Rothenberger <[email protected]> wrote:
> Hi Phil,
>
> I thought the missing name was normal. When I wrote my friend today, I had to
> explain that after selecting the file, he had to click the load button!
>
> I'm not sure I know what you mean by the lines issue. What am I looking for
> in Safari with this issue?
>
> Otis
>
> --
> Otis Rothenberger
> [email protected]
> http://chemagic.com
>
>
>
>
> On Sep 17, 2013, at 6:19 PM, Philip Bays wrote:
>
>> Bob:
>>
>> On a Mac using the latest OS (10.8.5)
>>
>> Firefox works fine to load and write files; there seems to be no choice
>> where they get downloaded, though I can control that in the browser
>> preferences. I note that the name of the file selected to load is given in
>> the dialog.
>>
>> In Safari there are a couple of issues. The name is not given when the
>> file is chosen. More importantly, we are back to the lines issue. I have
>> cleared the browser cache, and, in fact, disabled it. Perhaps Otis can
>> confirm that glitch??
>>
>>
>> On Sep 17, 2013, at 5:54 PM, Robert Hanson <[email protected]> wrote:
>>
>>> Used to be that it required the signed applet to read and write files
>>> locally. Well, well, what do you know? I'm liking HTML5 more and more. The
>>> following commands, previously for the signed applet only, now work in
>>> JSmol/HTML5.
>>>
>>> load ? x = load("?")
>>>
>>> write file ?
>>>
>>> write xxx.jpg write xxx.png write PNGJ xxx.png
>>> write PNGJ 500 500 "xxx.png"
>>> write xxx.zip write xxx.jmol
>>>
>>> write xxx.pdb write xxx.mol write xxx.v2000
>>> write xxx.v3000 write xxx.xyz
>>>
>>>
>>> What's especially satisfying for me is that the loading is done
>>> asynchronously. I had thought that would be extremely difficult to do -- to
>>> pause a running script of however many levels of depth and deep into
>>> however many function calls while an asynchronous file load was happening,
>>> then restart upon completion at the right place. Well, guess what? It was
>>> only moderately difficult! The HTML5 FileReader API is great.
>>> [http://www.w3.org/TR/FileAPI/ ] Looks like this has reasonable support
>>> across browsers (http://caniuse.com/#feat=filereader), although one cannot
>>> go back very far in time.
>>>
>>> Writing files to disk still requires "reflecting" the data from
>>> Info.serverUrl, but I'm optimistic (based on http://caniuse.com/filesystem)
>>> that the HTML5 FileWriter API will continue to be introduced and at some
>>> point will allow us to get rid of the need of a server for local file
>>> writing. Certainly what we have now is close to ideal.
>>>
>>> Check it out at http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm
>>>
>>> http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.6_2013.09.17.zip
>>>
>>> Bob
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Larson-Anderson Professor of Chemistry
>>> St. Olaf College
>>> Northfield, MN
>>> http://www.stolaf.edu/people/hansonr
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
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>>
>> Philip Bays
>> Emeritus Professor of Chemistry
>> Saint Mary's College
>> Notre Dame, IN 46556
>> [email protected]
>>
>>
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>
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J. Philip Bays
Emeritus Professor of Chemistry
Department of Chemistry and Physics
Saint Mary's College
Notre Dame, IN 46556
[email protected]
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