what an evil bug. Yes, probably due to the update. Fundamentally this had
to do with how Safari was translating characters into integers.
Please test ASAP and give details about which browsers exactly. Detail for
reproduction, please.
On Tue, Sep 17, 2013 at 7:20 PM, Otis Rothenberger <[email protected]>wrote:
> Phil,
>
> OK, I see it on Bob's page. I've been testing on my page at:
>
> http://chemistry.illinoisstate.edu/osrothen/JSmolVMK.htm
>
> I haven't seen the lines there yet. Try it per the load commands for the
> script field on the main page:
>
> loadpdb
> searchpdb
>
> I'm on Safari 6.0.5 (7536.30.1)
>
>
> I haven't yet document the read/write commands, but the are
>
> loadloc
> saveloc
>
> Otis
>
> --
> Otis Rothenberger
> [email protected]
> http://chemagic.com
>
>
>
>
> On Sep 17, 2013, at 8:05 PM, Bays Philip wrote:
>
> Try loading a protein from the right-hand column. What do you see?
> Remember when we had the odd display of simply lines on the screen several
> weeks ago? I see it again. You may have to load several structures before
> the problem shows up. Once it appears, you have to reload the page to get
> rid of it.
>
> Now, I updated the OS today to 10.8.5 and that also updates Safari (6.0.5)
> so the problem could be there.
>
>
> On Sep 17, 2013, at 7:41 PM, Otis Rothenberger <[email protected]>
> wrote:
>
> Hi Phil,
>
> I thought the missing name was normal. When I wrote my friend today, I had
> to explain that after selecting the file, he had to click the load button!
>
> I'm not sure I know what you mean by the lines issue. What am I looking
> for in Safari with this issue?
>
> Otis
>
> --
> Otis Rothenberger
> [email protected]
> http://chemagic.com
>
>
>
>
> On Sep 17, 2013, at 6:19 PM, Philip Bays wrote:
>
> Bob:
>
> On a Mac using the latest OS (10.8.5)
>
> Firefox works fine to load and write files; there seems to be no choice
> where they get downloaded, though I can control that in the browser
> preferences. I note that the name of the file selected to load is given in
> the dialog.
>
> In Safari there are a couple of issues. The name is not given when the
> file is chosen. More importantly, we are back to the lines issue. I have
> cleared the browser cache, and, in fact, disabled it. Perhaps Otis can
> confirm that glitch??
>
>
> On Sep 17, 2013, at 5:54 PM, Robert Hanson <[email protected]> wrote:
>
> Used to be that it required the signed applet to read and write files
> locally. Well, well, what do you know? I'm liking HTML5 more and more. The
> following commands, previously for the signed applet only, now work in
> JSmol/HTML5.
>
> load ? x = load("?")
>
> write file ?
>
> write xxx.jpg write xxx.png write PNGJ xxx.png
> write PNGJ 500 500 "xxx.png"
> write xxx.zip write xxx.jmol
>
> write xxx.pdb write xxx.mol write xxx.v2000
> write xxx.v3000 write xxx.xyz
>
>
> What's especially satisfying for me is that the loading is done
> asynchronously. I had thought that would be extremely difficult to do -- to
> pause a running script of however many levels of depth and deep into
> however many function calls while an asynchronous file load was happening,
> then restart upon completion at the right place. Well, guess what? It was
> only moderately difficult! The HTML5 FileReader API is great. [
> http://www.w3.org/TR/FileAPI/ ] Looks like this has reasonable support
> across browsers (http://caniuse.com/#feat=filereader), although one
> cannot go back very far in time.
>
> Writing files to disk still requires "reflecting" the data from
> Info.serverUrl, but I'm optimistic (based on http://caniuse.com/filesystem)
> that the HTML5 FileWriter API will continue to be introduced and at some
> point will allow us to get rid of the need of a server for local file
> writing. Certainly what we have now is close to ideal.
>
> Check it out at http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm
>
> http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.6_2013.09.17.zip
>
> Bob
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
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>
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> Emeritus Professor of Chemistry
> Department of Chemistry and Physics
> Saint Mary's College
> Notre Dame, IN 46556
> [email protected]
>
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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